Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26g12
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    43   2e-04
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    43   2e-04
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr...    30   0.98 
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 32/50 (64%)
 Frame = +1

Query: 388 VYVNIVNVQDVALDSVELTFKDQYLGRSEMWRLKNHLVSTCVYLNQKIEY 537
           V   +  V  V+LD+V+LTF++QY+ R++M+R ++ L+    Y+ +   Y
Sbjct: 357 VKCTLETVDTVSLDNVQLTFREQYMSRADMYRYRSCLIGRMTYVEEPKRY 406


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 32/50 (64%)
 Frame = +1

Query: 388 VYVNIVNVQDVALDSVELTFKDQYLGRSEMWRLKNHLVSTCVYLNQKIEY 537
           V   +  V  V+LD+V+LTF++QY+ R++M+R ++ L+    Y+ +   Y
Sbjct: 357 VKCTLETVDTVSLDNVQLTFREQYMSRADMYRYRSCLIGRMTYVEEPKRY 406


>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
           protein W09G3.6 protein.
          Length = 1125

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +1

Query: 292 QVTKVDAPGRGRDTISVEQSIATTFQLRTFADVYVNIVNVQDVALDSVELTFKDQYLGRS 471
           Q+ KV  PG    T        TT  + T   + V + N  DVA++++ +  ++    + 
Sbjct: 646 QIVKVIRPGHRLQT-------TTTKPIATVTPITVPVANADDVAVNNMGMISEEMRRKQD 698

Query: 472 EMW---RLKNHLVSTCVYLNQKI 531
           EMW   RL  H+     + N  +
Sbjct: 699 EMWLDLRLTQHIKKHSSHANDDV 721


>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
            protein Y37B11A.2 protein.
          Length = 1133

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 374  RSWKVVAILCSTLIVSLPRPGASTFVTCSNNRG 276
            ++WK      +T++++LP+   S FV C   RG
Sbjct: 911  QNWKTFITYLNTVVLNLPQENFSKFVFCKEYRG 943


>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
           protein R10E8.6 protein.
          Length = 1696

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 270 IFGMINFDYIFFL*PWIVFQVDNQIFGAKTRLMH 169
           IF  INFD + FL    +F V NQ+   K +L H
Sbjct: 239 IFYSINFDDMVFLKEVSLFLVLNQLLSKKYKLQH 272


>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical protein
            F21G4.6 protein.
          Length = 1885

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/28 (28%), Positives = 21/28 (75%)
 Frame = +2

Query: 284  YYYKLQKWTPPDAAEIQLVWNKVLLPLS 367
            ++  L++WTP D+ ++++ ++ + LP+S
Sbjct: 949  FWSVLREWTPHDSLKVEVPFSAIALPVS 976


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,086,161
Number of Sequences: 27780
Number of extensions: 272327
Number of successful extensions: 733
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)