Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26g06
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical ...    31   0.53 
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    30   0.93 
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    30   0.93 
AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z48582-2|CAA88466.2|  228|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical
           protein B0524.3 protein.
          Length = 507

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 124 IKSGACAFSKALVALQKPSWQVNSLAALEITQ 219
           +K  A    KAL +L+K SWQV+SL  L   Q
Sbjct: 192 VKGQAHRLEKALASLEKVSWQVSSLLGLPAIQ 223


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 299 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 168
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 299 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 168
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical
           protein W03F8.6a protein.
          Length = 128

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = -1

Query: 302 NFTFQHNRGVDCSLNRLPCVTDQQC-RDNCVISSAASELTCQDGFCNATNALLNAQAPDL 126
           ++  +H +G D       C    +C  D C+         C D  CN++N L+   A  L
Sbjct: 60  SYVRRHKKGDDSYTITKSCGEVGKCFEDGCIGPGDEKNCCCSDNMCNSSNGLIYPTAGIL 119

Query: 125 I 123
           I
Sbjct: 120 I 120


>Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical
           protein F35G2.1a protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 495 AQPGILCVTPHSSHSIKTIMLNFLANTYFTDNY 397
           A  G L  TPHS+  I+  +L  ++N Y  + Y
Sbjct: 141 ATQGKLFETPHSAEQIRDALLRTVSNEYMFNRY 173


>U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical
           protein F08D12.7 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 36  SVRAHACLRHDKISACGENVKQAQCG 113
           S +   C RH K+  C   V +A CG
Sbjct: 291 SKKEETCERHTKLKECTRTVMEASCG 316


>Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical
           protein Y26G10.1 protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 305 LNFTFQHNRGVDCSLNRLPCVTDQQCRDNC 216
           +N+ +    G  C  N +PC+    C  NC
Sbjct: 401 VNYNYDLRFGAFCDTNTMPCLRFDNCIRNC 430


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical protein
            R11A8.6 protein.
          Length = 1141

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -1

Query: 242  TDQQCRDNCVISSAASELTCQDGFCN-ATNAL--LNAQAPDLIECDPALGLLHIFSAGGD 72
            T    +   +I +   E   ++G C   TN +  L  QA  L+  D A   +HI  +  D
Sbjct: 955  THSDAKTIVMIDTTEDESLIEEGLCREVTNRVQRLRKQAK-LVSTDTAH--VHIVVSPAD 1011

Query: 71   FVVSQACVSTYRDLVDDTGTP 9
              +++   +   D+V  TGTP
Sbjct: 1012 SQLAKVVAAKLNDIVSATGTP 1032


>Z48582-2|CAA88466.2|  228|Caenorhabditis elegans Hypothetical
           protein F27E5.4 protein.
          Length = 228

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 275 VDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC-NATNALLN 144
           V CSL +L C  D QC     +  +  E     G C +    LLN
Sbjct: 99  VHCSLGKLACEGDLQCNSKFGVFMSECEADAARGACTDKCKTLLN 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,818,089
Number of Sequences: 27780
Number of extensions: 262574
Number of successful extensions: 619
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)