Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26f20
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ...    25   5.0  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   5.0  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    25   6.6  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   8.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  

>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 260 IWHVTAAPPVNT--NKPPFSQTT-ASKQSLINANF 165
           IWHV+A+P V +  N P    T+  S + +  ANF
Sbjct: 25  IWHVSASPEVGSKYNLPTVPTTSHVSYRQIAKANF 59


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 286 LKCIDFDYYGLCSKKMFCNLQTN-LQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQ 450
           L  +D +   LC K +   L  + LQK +     ELD L R++Y  +P  + + ++
Sbjct: 228 LSNLDLECLTLCLKIIKGILTLDELQKAIKLKQTELDKLERRLYRPSPQNIFEIFE 283


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 37  RVASSSPLFIMERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDC 189
           ++     +  +ER+   LN G    +TTK I+D     I+    +A ++ C
Sbjct: 267 KIREREVMITLERVKKILNAGANVILTTKGIDDLCLKSIIEAGAMA-VRRC 316


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 272 SSSSIWHVTAAPPVNTNKPPFSQTTASKQSLINANFALAT 153
           +SS I    AAP  N N+   SQ TA   S +   F   T
Sbjct: 132 TSSQIGKDNAAPVENVNEKSTSQETAPPVSTVPIQFGSIT 171


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -2

Query: 272 SSSSIWHVTAAPPVNTNKPPFSQTTASKQSLINANFALATILSRKRSS 129
           SSS+I   T    +++N P     TAS QS +  +  LAT L    SS
Sbjct: 756 SSSAIVSSTTVSNISSNLP---SATASSQSQLTNSSTLATSLYLSSSS 800


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,533
Number of Sequences: 5004
Number of extensions: 34119
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)