Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26f20
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    29   2.2  
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601           28   5.0  
10_01_0117 + 1447741-1449123                                           27   8.8  
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196...    27   8.8  

>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 151 IVAKAKLAFIKDCFEAVVCENGGLFVLTGGAAVTCHIDDDD 273
           +   A   F+        C  GGL +L G   V C+ID DD
Sbjct: 439 LTTSASFTFLPFLLRCFFCVFGGLLLLAG-LGVLCYIDQDD 478


>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
          Length = 390

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 46  SSSPLFIMERLLNQLNLGVLPYITTKDI--EDRLRDKIVAKAKL 171
           SS    ++E +LN +  G+L Y+   D+  ED +  ++ +K KL
Sbjct: 325 SSPTALVVEGILNSVAAGILIYMALVDLLAEDFMNPRVQSKGKL 368


>10_01_0117 + 1447741-1449123
          Length = 460

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = +1

Query: 40  VASSSPLFIMERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGG 219
           ++SSSP  +  R   +L L V P        + +RD +V    + + +   EA +   G 
Sbjct: 1   MSSSSPSLLSRRSTAELELPVPPEFRCPISLELMRDPVVGPTGITYDRAGIEAWLLAAGA 60

Query: 220 LFVLTGGAAVTCHIDDDDYKS 282
               T  A+ TC +   D ++
Sbjct: 61  --GKTAAASSTCPVTKGDLRA 79


>09_02_0602 -
           11118788-11119178,11119262-11119451,11119590-11119658,
           11119890-11120016,11120134-11120399,11120760-11120872,
           11121693-11121764,11121860-11121998,11124277-11124360,
           11125278-11125771,11127604-11128187
          Length = 842

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 460 RLXFDNISALPTDLTCKFDAL 398
           R+  DN S  PTD TCK  +L
Sbjct: 347 RIPLDNPSTFPTDYTCKIISL 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,615,710
Number of Sequences: 37544
Number of extensions: 213459
Number of successful extensions: 578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)