Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26f20
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 251  VTAAPPVNTNKPPFSQTTASKQSLINANFA 162
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 251  VTAAPPVNTNKPPFSQTTASKQSLINANFA 162
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical
           protein T08G5.2 protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 253 CHIDDDDYKSALKCIDFDYYGLCSKKMFCN 342
           C    D Y    KC DFD Y +   K FC+
Sbjct: 458 CSTFTDCYPEIEKCADFDSYSIGIIKTFCD 487


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,435,985
Number of Sequences: 27780
Number of extensions: 199542
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)