Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26f20
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.4  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 184 DCFEAVVCENGGLFVLTGGAAV 249
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 184 DCFEAVVCENGGLFVLTGGAAV 249
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 184 DCFEAVVCENGGLFVLTGGAAV 249
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 290 NA*ILIITAFAQKKCFATC 346
           NA +L ITAF  ++  A C
Sbjct: 139 NATVLTITAFTVERYIAIC 157


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 152 LWLKQSWHLSKIVSKP 199
           LW++QSW+  K+  +P
Sbjct: 79  LWVEQSWYDYKLRWEP 94


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 152 LWLKQSWHLSKIVSKP 199
           LW++QSW+  K+  +P
Sbjct: 79  LWVEQSWYDYKLRWEP 94


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/28 (21%), Positives = 19/28 (67%)
 Frame = +2

Query: 110 ILRQRILKIACAIKLWLKQSWHLSKIVS 193
           + +++ + +  AIK W+++  H+ ++V+
Sbjct: 91  LTKKQEMLVRSAIKYWVERHKHIVRLVT 118


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 298 LCILMRFCSRRRR 260
           +C+ MR C RR R
Sbjct: 103 VCVCMRKCPRRHR 115


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 152 LWLKQSWHLSKIVSKP 199
           LW++QSW+  K+   P
Sbjct: 75  LWVEQSWYDYKLKWDP 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,831
Number of Sequences: 438
Number of extensions: 1878
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)