Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26f11
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0196 + 20835495-20837255                                         30   1.3  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   4.0  
07_01_0249 - 1844894-1845363,1845557-1848158                           27   6.9  
06_03_0350 - 19799138-19799211,19799808-19800174                       27   9.1  

>02_04_0196 + 20835495-20837255
          Length = 586

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/22 (63%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = -1

Query: 475 IKLYCRLGVLEQAQRRL-SGGA 413
           +KLYC LG+L++A+R L SGGA
Sbjct: 120 LKLYCSLGLLDRARRVLYSGGA 141


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 399 CS*NQFCSSAALVILERMNNCITPILSSNIVCVCKYSGLPCLTC 268
           C+   F SS AL+IL    N   P + S  + VC   G+  L C
Sbjct: 638 CNSMSFMSSIALIILLVNPNLYRPAIRSYALSVCTAVGMFALLC 681


>07_01_0249 - 1844894-1845363,1845557-1848158
          Length = 1023

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 470 TLLSLGRLGAGSTP-TVGRCTGATRVR 393
           TL++LG    G+ P ++G+CT  TRVR
Sbjct: 387 TLIALGNSLFGAIPASLGKCTSLTRVR 413


>06_03_0350 - 19799138-19799211,19799808-19800174
          Length = 146

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 480 AELNFTVAWASWSRLNADCRAVHWGNTC 397
           A L   V WA      ADCRA+  G  C
Sbjct: 51  AALQAAVDWACGPAGGADCRAIQQGGAC 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,970,393
Number of Sequences: 37544
Number of extensions: 286899
Number of successful extensions: 811
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)