Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26f08
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 99 4e-22
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 57 2e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 47 1e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 1e-05
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.41
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 29 0.54
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 0.71
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.2
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 2.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 2.2
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 5.0
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 5.0
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 5.0
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 6.7
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 6.7
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 6.7
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 6.7
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 8.8
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.8
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 98.7 bits (235), Expect = 4e-22
Identities = 48/129 (37%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Frame = +2
Query: 167 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 340
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 341 TGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES--------ATQTCYNCNKSG 487
GH+ R+C SP+ CY C + GHIAR+C G++S + CY C G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 488 HISRNCPDG 514
H +R+C G
Sbjct: 126 HQARDCTMG 134
Score = 93.5 bits (222), Expect = 2e-20
Identities = 43/99 (43%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +2
Query: 137 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCKEE 313
S P + CYKC R GH AR+C G S G +R C+ C GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 314 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 430
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 93.1 bits (221), Expect = 2e-20
Identities = 54/143 (37%), Positives = 68/143 (47%), Gaps = 28/143 (19%)
Frame = +2
Query: 161 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNRTGHFA 295
S+CY CN+TGH A ECT+ G + RD S RQ +C+KC R GH A
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95
Query: 296 RDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 436
RDC+ + CY C GH AR+C CY+C K GH + C +
Sbjct: 96 RDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQ 152
Query: 437 GGRESATQTCYNCNKSGHISRNC 505
S Q CY CN+ GHI+ NC
Sbjct: 153 A---SDGQLCYKCNQPGHIAVNC 172
Score = 91.9 bits (218), Expect = 5e-20
Identities = 35/86 (40%), Positives = 46/86 (53%)
Frame = +2
Query: 248 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 427
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 428 CPEGGRESATQTCYNCNKSGHISRNC 505
CP CY C + GHI+R+C
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 31.9 bits (69), Expect = 0.058
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 149 AMSSSVCYKCNRTGHFARECT 211
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 56.8 bits (131), Expect = 2e-09
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Frame = +2
Query: 248 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 409
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 410 GHIARNCPEG--GRESATQTCYNCNKSGHISRNC 505
GH++ C + G C C+ H++++C
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166
Score = 47.2 bits (107), Expect = 1e-06
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Frame = +2
Query: 167 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 334
C+ C + GH ++C + ++D+ CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDN-----VSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 335 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 457
+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 37.9 bits (84), Expect = 9e-04
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +2
Query: 161 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE-------EAD 319
S+C++C H C++ G + + KCF C+ GH + C++ +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 320 RCYRCNGTGHIARECAQ 370
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 34.7 bits (76), Expect = 0.008
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +2
Query: 356 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 505
R Q + C+ C + GHI ++CPE + C+ C H C
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNAC 115
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 137 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE 310
SK + + C+ C+ GH + +C Q G + C C+ H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 26.6 bits (56), Expect = 2.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 464 CYNCNKSGHISRNCPD 511
C+ C + GHI ++CP+
Sbjct: 79 CFACRQQGHIVQDCPE 94
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 47.2 bits (107), Expect = 1e-06
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Frame = +2
Query: 275 NRTGHFARDCKEEADRCYRCNGTGHIAREC----------------AQSPDEPSCYNCNK 406
+R +F D E+ C+ C G GHI+++C + P C NC
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGL 132
Query: 407 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 508
GHIA C E R+ + C C+ H S CP
Sbjct: 133 LGHIAARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 40.7 bits (91), Expect = 1e-04
Identities = 36/145 (24%), Positives = 48/145 (33%), Gaps = 26/145 (17%)
Frame = +2
Query: 158 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 319
S VC+ C GH +++C T G + S +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 320 R----CYRCNGTGHIARECAQ----------------SPDEPSCYNCNKTGHIARNCPEG 439
R C C+ H + C S CYNC H +C
Sbjct: 146 RGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDDCTLP 205
Query: 440 GRESATQTCYNCNKSGHISRNCPDG 514
R + ++ C NCP G
Sbjct: 206 SRSNYPESTAFC------EANCPSG 224
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 1e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 389 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 508
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +2
Query: 251 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 385
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 443 RESATQTCYNCNKSGHISRNCPD 511
R+ Q C NC GH +CP+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPE 326
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 158 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 304
+ VC C GH +C + R + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPE-----RIN--HTMNIVCRHCGSIGHIARDC 349
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 29.1 bits (62), Expect = 0.41
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +2
Query: 143 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR-DCKEEAD 319
P A +V K N GH E G V +S + K + +R G F+R +
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSS 443
Query: 320 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 463
R + + H +PD P+ + ++ G+++ T+T
Sbjct: 444 RMKKGSKAKH-----EDAPDVPAIPHAYIADSSTKSSYRNGKKTPTRT 486
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.54
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = +2
Query: 425 NCPEGGRESATQTCYN----CNKSGHISRNCP 508
+CP+G E T C+N C +G+IS P
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIP 97
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 0.71
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 440 GRESATQTCYNCNKSGHISRN--CP 508
GR+ T+ C NC + GH+ N CP
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTNKICP 963
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 368 QSPDEPSCYNCNKTGHIARN--CPEGGR 445
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 245 NRQREKCFKCNRTGHFARDCKEEA 316
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 161 SVCYKCNRTGHFAREC 208
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 287 HFARDCKEEADRCYRCNGTGHIAREC 364
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 461 TCYNCNKSGHISRNC 505
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 6.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 263 CFKCNRTGHFARDCK 307
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 161 SVCYKCNRTGHFAREC 208
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 287 HFARDCKEEADRCYRCNGTGHIAREC 364
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 461 TCYNCNKSGHISRNC 505
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 6.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 263 CFKCNRTGHFARDCK 307
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 263 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 388
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 356 RECAQSPDEPS-----CYNCNKTGHIARNCP 433
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 5.0
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +2
Query: 164 VCYKCNRTGHFAREC 208
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -3
Query: 473 SYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA-----PCRYICSNGQPL 309
S S ++S TP P SS+ P+ S TTA+ ++ LC Y C N Q
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQ---LCGSNYYDASSYYCDNDQLC 899
Query: 308 P 306
P
Sbjct: 900 P 900
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 255 VRSASSATAQDTLRGIARKRLTVA 326
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 5.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 437 GGRESATQTCYNCNKSG 487
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 473 SYSRSASQTPAPPRDSSVRCGPSCCSCN 390
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 514 PVGTVAGDVAGLVAVIAGLRRRLPPPLGTV 425
P GT A ++ L + L R L PP GT+
Sbjct: 514 PYGTSAEELTSLFSPFGELGRILIPPAGTI 543
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/77 (22%), Positives = 28/77 (36%)
Frame = +2
Query: 233 DSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTG 412
D +E KC+ T F ++C E+ D N G E + S +
Sbjct: 87 DQNSELSQENLTKCDTTHDFEKNCSEKTDSTSADNIAGFTILEALSATGLRSIRYAKELP 146
Query: 413 HIARNCPEGGRESATQT 463
++ R E+A +T
Sbjct: 147 NVKRILANDLLENAVKT 163
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 462 VCVADSRPPSGQFRAMWP 409
V ++D RPP + RA WP
Sbjct: 302 VSISDYRPPKKRKRAAWP 319
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 242 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 340
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 8.8
Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Frame = -3
Query: 374 GSVRTRALCAPCRYICSNGQPLPCNPSQSVLCGCT*STSHVADXXXXXXXXXXXACIRAR 195
G R + PC +C G PC + C C + H C
Sbjct: 283 GKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHARCSNISKVNTEPFRCENVC 342
Query: 194 NARSGC---TCSKRLNS 153
+ C TC KR +S
Sbjct: 343 DELLPCGEHTCKKRCHS 359
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 8.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 106 LH*CLKCSRIFKTDRN 153
LH C+ C IF DRN
Sbjct: 425 LHWCINCRSIFSGDRN 440
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 8.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 206 IRARNARSGCTCSKRLNSLRSVLKILEHLRH*CNDRSTINYPMNLQI 66
+R+R S KR + L+ V LEHL+H + ++N + ++I
Sbjct: 411 LRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRI 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,389
Number of Sequences: 5004
Number of extensions: 36623
Number of successful extensions: 175
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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