Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26f08
         (514 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.26 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   3.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.2  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   3.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 383 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 481
           P C  C    H  + CP+G +   T    N  K
Sbjct: 76  PICGACGDIAHTVKYCPKGTKNPGTLATVNAFK 108


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 460 LRRRLPPPLGTVPCD 416
           LRR+L   LG  PCD
Sbjct: 48  LRRQLKCALGEAPCD 62


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 131 EFSKPIAMSSSVCYKCNRTGHFAR 202
           +  KP+    +V Y   ++G+F+R
Sbjct: 165 DIGKPVVAEETVDYMLEKSGNFSR 188


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 460 LRRRLPPPLGTVPCD 416
           LRR+L   LG  PCD
Sbjct: 48  LRRQLKCALGEAPCD 62


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 512 RRDSCGRCGRTCCSYSRSASQTPAP 438
           R +S G CGR   ++  S    P P
Sbjct: 40  RSESSGYCGRRPSTFGSSNEALPQP 64


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 512 RRDSCGRCGRTCCSYSRSASQTPAP 438
           R +S G CGR   ++  S    P P
Sbjct: 40  RSESSGYCGRRPSTFGSSNEALPQP 64


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 247 IETGIPRHHAPLRAFAREMPGP 182
           +  G+P HH       ++MP P
Sbjct: 57  LRQGVPGHHYGAAGSQQDMPYP 78


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 446 ESATQTCYNCNKSGHISRNCPD 511
           ++   TC   NK GH +R   D
Sbjct: 583 DAGVYTCSARNKQGHSARRSGD 604


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 446 ESATQTCYNCNKSGHISRNCPD 511
           ++   TC   NK GH +R   D
Sbjct: 583 DAGVYTCSARNKQGHSARRSGD 604


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 159 QAFATSATGPGI 194
           Q FAT+A+ PG+
Sbjct: 909 QGFATAASSPGL 920


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,232
Number of Sequences: 438
Number of extensions: 2609
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)