Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26f06
         (541 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    25   1.6  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         23   8.7  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   8.7  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     23   8.7  

>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 137 RFVARDIANKLKFKNTK---KAIRDHVDGKYKCTFEQACINISKEKHVKQGNPLYLQTQT 307
           RFVA+ + NK KF++ K   K +   +D  +   F  AC+ +     + Q   LY  TQ 
Sbjct: 476 RFVAQHVRNKDKFESVKEDWKYVALVLDRLFLWIFTIACV-LGTCLIILQAPSLYDNTQP 534

Query: 308 I 310
           I
Sbjct: 535 I 535


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 342 SCAP-R*PTRRSCKIGFTNTCCPSAPPDS 425
           SC+P    +  SC      + CP++PP S
Sbjct: 237 SCSPLSTASSASCSSSAAGSLCPTSPPAS 265


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 303 CVCKYSGLPCLTCFSLLILIHACSNVHLYLPST 205
           CV K+S LP L C    +  +A  N   +  ST
Sbjct: 850 CVRKFSTLPILACGQNNVCNYASRNDRTFWLST 882


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 518 TAASWPHRNGPRRERN*TLLSLGR 447
           TAA  P +NG    +N +L  +GR
Sbjct: 432 TAAYSPQQNGVAERKNRSLTEMGR 455


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,148
Number of Sequences: 2352
Number of extensions: 11901
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 50320221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)