Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26f01
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    27   1.7  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 407 FQRYLRPIQSRCTHTFIIIYMDFFKT*VIGFCMEFYNSAIRK 282
           F+  L P+   CT  FII Y+  F    +GFC  F + + RK
Sbjct: 223 FKHNLNPLT--CTGRFIIGYVSTFAAYWLGFCGIFLDYSRRK 262


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
 Frame = -3

Query: 618 HNMLLSYFL*LRLVHTNPSPMTLVSCDSDKCIYPINLS-RTYNIRLLYK*LIRLPPGYFD 442
           H+  +S+    R +      + ++   +  C + +  + R +N  ++   LI     Y  
Sbjct: 268 HHNHVSFMTRFRKIDLKGLILLIIGVTTMTCAFTLGGNVREWNDPVVISLLIASSISYL- 326

Query: 441 TTFDYVENLVSFSKVPPTYSVTVYAHVHYYLHGFF*NI-GYRVLYGILQF 295
            +F YVE  V+F  + P   +T    +  YL  FF ++  +  +YG+  F
Sbjct: 327 -SFVYVEAFVAFEPLAPMDVLTERTCLSSYLCNFFHSVANFGWIYGMPLF 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,298
Number of Sequences: 5004
Number of extensions: 51662
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)