Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26f01
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415     30   1.7  
07_03_0698 - 20765305-20768526                                         27   9.2  
04_03_0614 + 18038848-18040287                                         27   9.2  

>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
          Length = 1490

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 485 NLMLYVRDKFIGYIHLSLSQLTNVIGEGFVCTSLS 589
           N++L   +KF G+I  +LS LTN++  G    +LS
Sbjct: 463 NILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLS 497


>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/74 (29%), Positives = 31/74 (41%)
 Frame = -3

Query: 573 TNPSPMTLVSCDSDKCIYPINLSRTYNIRLLYK*LIRLPPGYFDTTFDYVENLVSFSKVP 394
           TN S M    CDS KC  P+  S   +I  L + L  LP  Y D     +   +     P
Sbjct: 482 TNDSKMAKYCCDSAKCGPPVIYS-LVDI-YLNRALALLPHRYDDRHLKGILCNILTQCCP 539

Query: 393 PTYSVTVYAHVHYY 352
             + + ++ H  YY
Sbjct: 540 DVFCMKMFLHALYY 553


>04_03_0614 + 18038848-18040287
          Length = 479

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 468 IRLPPGYFDT-TFDYVENLVSFSKVPPTYSVTVYAHVHYY 352
           ++  PG+    TF+Y EN  +F  + P Y  +V A+ H Y
Sbjct: 192 LKFGPGWMKLKTFEY-ENKENFFSIHPRYGSSVKANTHRY 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,469,676
Number of Sequences: 37544
Number of extensions: 297479
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)