Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26e16
         (392 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   2.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   4.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 203 FLHKWRRSSSTWTSHN 250
           F  +WR++ + W +HN
Sbjct: 652 FFPRWRQTLAMWLNHN 667



 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 328 QNHLDQWY 351
           Q HLD WY
Sbjct: 623 QQHLDAWY 630


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 93  NQTVSVITSDGRNFIGT 143
           N T+SVI++DG +F  T
Sbjct: 300 NHTLSVISTDGSDFNAT 316


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 163 VWSKPLRVPIKLRPSEVITDT 101
           +W KP+ + +  R S +I  T
Sbjct: 77  IWPKPVHIKLTNRESSIIDKT 97


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 123 HPKLLPTLFDS 91
           HP L+PT FDS
Sbjct: 763 HPFLIPTGFDS 773


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,394
Number of Sequences: 336
Number of extensions: 1769
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8330471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)