Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26e16
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 74 1e-29
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 42 2e-04
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 39 0.001
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 36 0.009
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 36 0.012
07_01_0479 + 3606663-3607448 35 0.027
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 31 0.33
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 29 1.0
04_04_0022 + 22199603-22199782,22201434-22201502,22201610-222017... 29 1.0
11_04_0456 + 17909846-17909886,17910219-17910240,17910608-179106... 28 3.1
04_01_0072 - 784922-785567,785673-786406 27 5.4
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004 27 7.1
06_03_0725 - 23894215-23894412,23894660-23894803,23895058-238951... 26 9.4
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 26 9.4
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 73.7 bits (173), Expect(2) = 1e-29
Identities = 32/45 (71%), Positives = 40/45 (88%)
Frame = +3
Query: 75 GLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSS 209
GLE+ V+Q +SVIT+DGRN +GTL+GFDQ NIILDESHERV+S+
Sbjct: 7 GLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYST 51
Score = 72.5 bits (170), Expect(2) = 1e-29
Identities = 29/53 (54%), Positives = 43/53 (81%)
Frame = +3
Query: 195 RVFSSTSGVAQVVLGLHIIRGDNVAIVGQIDESIDSRLDLGNIKAEPLGPMVH 353
+V GV Q+VLGL+IIRGDN+++VG++DE +D+RLDL N++A PL P++H
Sbjct: 89 KVSCQHEGVQQLVLGLYIIRGDNISVVGEVDEELDARLDLSNLRAHPLKPVIH 141
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/70 (25%), Positives = 44/70 (62%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ Y+++ + + + R +GTL+GFDQ +N+++D + E +G + +G+ ++RG
Sbjct: 10 LKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVVRG 64
Query: 258 DNVAIVGQID 287
++V ++ ++
Sbjct: 65 NSVVMIEALE 74
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/71 (26%), Positives = 39/71 (54%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
++ + + VI + +GTL GFD +N++L++ E +++ G L ++ G
Sbjct: 84 IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTA-EGRRITKLDQILLNG 142
Query: 258 DNVAIVGQIDE 290
+N+AIV +D+
Sbjct: 143 NNIAIVRNLDQ 153
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +3
Query: 126 RNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQID 287
R IGTL+GFDQ +N+++D + E +G + +G+ +IRG++V ++ ++
Sbjct: 40 RVVIGTLRGFDQFMNLVVDNTVE-----VNGNEKNDIGMVVIRGNSVVMIEALE 88
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 35.9 bits (79), Expect = 0.012
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +3
Query: 123 GRNFIGTLKGFDQTINIILDES--HERVFS---STSGVAQVVLGLHIIRGDNVAIVGQID 287
G++ GTLKG+DQ +N++LDE+ ER SG + LGL + RG V +V D
Sbjct: 33 GQSVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSGKTR-QLGLIVCRGTAVMLVSPTD 91
>07_01_0479 + 3606663-3607448
Length = 261
Score = 34.7 bits (76), Expect = 0.027
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +3
Query: 72 SGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE------RVFSSTSGVAQV- 230
S + +VN + V DGR +G FD+ +N++L + E S T+G +
Sbjct: 7 SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTTGEREER 66
Query: 231 -VLGLHIIRGDNV 266
LGL ++RG+ V
Sbjct: 67 RTLGLLLLRGEEV 79
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 31.1 bits (67), Expect = 0.33
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +3
Query: 147 KGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIV 275
KGFD+ +N++LDE+ E + + LG +++GDN+ ++
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDT---RKSLGRILLKGDNITLM 136
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +3
Query: 138 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIV 275
G + GFD+ +N++LD++ E + + LG +++GDN+ ++
Sbjct: 32 GRIIGFDEYMNLVLDDAEE---INVKKDTRKSLGRILLKGDNITLM 74
>04_04_0022 +
22199603-22199782,22201434-22201502,22201610-22201708,
22201776-22201859,22202400-22202477
Length = 169
Score = 29.5 bits (63), Expect = 1.0
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +3
Query: 228 VVLGLHIIRGDNVAIVGQI 284
V LGL++IRG+NV ++G++
Sbjct: 98 VPLGLYVIRGENVVLIGEL 116
>11_04_0456 +
17909846-17909886,17910219-17910240,17910608-17910679,
17911964-17912044,17912121-17912336
Length = 143
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 39 FEFIYKIIRMASGLENYVNQTVSVITSDGR 128
F F+Y ++RM GL + Q +S +T GR
Sbjct: 67 FLFVYSVVRMKKGLHPQM-QWISYVTQSGR 95
>04_01_0072 - 784922-785567,785673-786406
Length = 459
Score = 27.1 bits (57), Expect = 5.4
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Frame = -1
Query: 287 VYLPD---YCHIVSSDYVKSKYYLSDATCGGKHSFVR-------FV*NNIYCLVKALKGA 138
VY+PD YC V Y ++KY + + GK+ ++ N+Y L K++KG
Sbjct: 221 VYVPDTSVYCRGVLYVYCQNKYVMRISLSNGKYQVIKPPSDCEGMAYTNLY-LGKSMKGV 279
Query: 137 NKITSIRSYYRHCLIHVIFES 75
++R LI+++ ES
Sbjct: 280 --YCAVRHLASRFLIYILDES 298
>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
Length = 258
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 215 WRRSSSTWTSHNQRRQCGNSRANRRVN**QIRPRKHQGRTTWTNGTLELV 364
WR + + ++R + G R RR + R + GRT W N T+ V
Sbjct: 130 WRHAGAGGRRRHRRARRGAVRLRRRRQQWRRRRTRSCGRTGWHNATVATV 179
>06_03_0725 -
23894215-23894412,23894660-23894803,23895058-23895126,
23895197-23895267,23895357-23895444,23895522-23895707,
23895805-23895903,23896002-23896082,23896575-23896634,
23896656-23896779,23897026-23897120,23897205-23897331,
23897559-23897662,23897883-23897945
Length = 502
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 179 RRISRKSVFLHKWRRSSSTWTSHNQRRQ-CGNSRANR 286
RRI RK + + K R++ S W Q RQ G S R
Sbjct: 449 RRIRRKPLAIPKERKNRSLWKRLKQERQEMGESLTQR 485
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 209 HKWR--RSSSTWTSHNQRRQCGNSRANR 286
H+WR R W SH + R CG +R
Sbjct: 318 HRWRGLRDRRQWQSHTRGRLCGCCAVSR 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,077,545
Number of Sequences: 37544
Number of extensions: 161447
Number of successful extensions: 410
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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