Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26e16
(392 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 156 2e-38
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 156 2e-38
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 156 2e-38
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 156 2e-38
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 116 4e-26
BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small ... 51 2e-06
AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein. 51 2e-06
AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein. 51 2e-06
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 41 0.002
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 41 0.002
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 41 0.002
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 41 0.002
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 41 0.002
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 41 0.002
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 41 0.002
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 41 0.002
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 41 0.002
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 41 0.002
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 41 0.002
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 41 0.002
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 41 0.002
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 41 0.002
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 41 0.002
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 41 0.002
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 41 0.002
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 41 0.002
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 41 0.002
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 41 0.002
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 41 0.002
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 40 0.003
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 40 0.003
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 40 0.003
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 40 0.003
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 40 0.003
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 39 0.007
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 39 0.007
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 39 0.007
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 39 0.007
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 39 0.007
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 39 0.007
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 39 0.007
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 39 0.007
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 39 0.007
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 38 0.009
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 38 0.016
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 36 0.063
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 36 0.063
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 36 0.063
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 36 0.063
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 36 0.063
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 36 0.063
Y08262-1|CAA69589.1| 914|Homo sapiens SCA2 protein. 35 0.083
U70323-1|AAB19200.1| 1312|Homo sapiens ataxin-2 protein. 35 0.083
BC111757-1|AAI11758.1| 1127|Homo sapiens ATXN2 protein protein. 35 0.083
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 34 0.15
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 34 0.15
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 34 0.15
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 34 0.15
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 34 0.15
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 34 0.15
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 34 0.15
D79997-1|BAA11492.2| 656|Homo sapiens KIAA0175 protein. 32 0.77
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 31 1.4
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 31 1.4
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 31 1.4
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 31 1.8
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 31 1.8
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 30 2.4
BC014039-1|AAH14039.1| 651|Homo sapiens maternal embryonic leuc... 30 3.1
AL442063-1|CAI16995.2| 651|Homo sapiens maternal embryonic leuc... 30 3.1
AL354932-1|CAI11034.2| 651|Homo sapiens maternal embryonic leuc... 30 3.1
AK222811-1|BAD96531.1| 651|Homo sapiens maternal embryonic leuc... 30 3.1
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 156 bits (379), Expect = 2e-38
Identities = 71/96 (73%), Positives = 84/96 (87%)
Frame = +3
Query: 66 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 245
M S LENY+N+TV+VITSDGR +GTLKGFDQTIN+ILDESHERVFSS+ GV QVVLGL+
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 246 IIRGDNVAIVGQIDESIDSRLDLGNIKAEPLGPMVH 353
I+RGDNVA++G+IDE DS LDLGNI+AEPL + H
Sbjct: 61 IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 156 bits (379), Expect = 2e-38
Identities = 71/96 (73%), Positives = 84/96 (87%)
Frame = +3
Query: 66 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 245
M S LENY+N+TV+VITSDGR +GTLKGFDQTIN+ILDESHERVFSS+ GV QVVLGL+
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 246 IIRGDNVAIVGQIDESIDSRLDLGNIKAEPLGPMVH 353
I+RGDNVA++G+IDE DS LDLGNI+AEPL + H
Sbjct: 61 IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 156 bits (379), Expect = 2e-38
Identities = 71/96 (73%), Positives = 84/96 (87%)
Frame = +3
Query: 66 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 245
M S LENY+N+TV+VITSDGR +GTLKGFDQTIN+ILDESHERVFSS+ GV QVVLGL+
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 246 IIRGDNVAIVGQIDESIDSRLDLGNIKAEPLGPMVH 353
I+RGDNVA++G+IDE DS LDLGNI+AEPL + H
Sbjct: 61 IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 156 bits (379), Expect = 2e-38
Identities = 71/96 (73%), Positives = 84/96 (87%)
Frame = +3
Query: 66 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 245
M S LENY+N+TV+VITSDGR +GTLKGFDQTIN+ILDESHERVFSS+ GV QVVLGL+
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 246 IIRGDNVAIVGQIDESIDSRLDLGNIKAEPLGPMVH 353
I+RGDNVA++G+IDE DS LDLGNI+AEPL + H
Sbjct: 61 IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 116 bits (278), Expect = 4e-26
Identities = 53/67 (79%), Positives = 61/67 (91%)
Frame = +3
Query: 66 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 245
M S LENY+N+TV+VITSDGR +GTLKGFDQTIN+ILDESHERVFSS+ GV QVVLGL+
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 246 IIRGDNV 266
I+RGDNV
Sbjct: 61 IVRGDNV 67
>BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 133
Score = 50.8 bits (116), Expect = 2e-06
Identities = 24/77 (31%), Positives = 42/77 (54%)
Frame = +3
Query: 108 VITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQID 287
V+ DGR IG L+ DQ N++L ++ ER+ + G+ ++RG+NV ++G+ID
Sbjct: 20 VLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGIFVVRGENVVLLGEID 78
Query: 288 ESIDSRLDLGNIKAEPL 338
+S L + E +
Sbjct: 79 LEKESDTPLQQVSIEEI 95
>AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein.
Length = 133
Score = 50.8 bits (116), Expect = 2e-06
Identities = 24/77 (31%), Positives = 42/77 (54%)
Frame = +3
Query: 108 VITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQID 287
V+ DGR IG L+ DQ N++L ++ ER+ + G+ ++RG+NV ++G+ID
Sbjct: 20 VLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGIFVVRGENVVLLGEID 78
Query: 288 ESIDSRLDLGNIKAEPL 338
+S L + E +
Sbjct: 79 LEKESDTPLQQVSIEEI 95
>AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein.
Length = 133
Score = 50.8 bits (116), Expect = 2e-06
Identities = 24/77 (31%), Positives = 42/77 (54%)
Frame = +3
Query: 108 VITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQID 287
V+ DGR IG L+ DQ N++L ++ ER+ + G+ ++RG+NV ++G+ID
Sbjct: 20 VLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGIFVVRGENVVLLGEID 78
Query: 288 ESIDSRLDLGNIKAEPL 338
+S L + E +
Sbjct: 79 LEKESDTPLQQVSIEEI 95
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 258 DNVAIVGQID 287
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 258 DNVAIVGQID 287
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 258 DNVAIVGQID 287
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 258 DNVAIVGQID 287
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 258 DNVAIVGQID 287
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 258 DNVAIVGQID 287
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 258 DNVAIVGQID 287
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 258 DNVAIVGQID 287
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 258 DNVAIVGQID 287
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Frame = +3
Query: 87 YVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----VVLGLHI 248
+++ + I DGR FIGT K FD+ +N+IL + E ++ S A+ VLGL +
Sbjct: 5 HIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVL 64
Query: 249 IRGDNV 266
+RG+N+
Sbjct: 65 LRGENL 70
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Frame = +3
Query: 87 YVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----VVLGLHI 248
+++ + I DGR FIGT K FD+ +N+IL + E ++ S A+ VLGL +
Sbjct: 5 HIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVL 64
Query: 249 IRGDNV 266
+RG+N+
Sbjct: 65 LRGENL 70
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERV------FSSTSGVAQVVLG 239
L Y+++T+ V GR G LKGFD +N++LD + E + + T Q LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQ--LG 72
Query: 240 LHIIRGDNVAIV 275
L + RG +V ++
Sbjct: 73 LVVCRGTSVVLI 84
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERV------FSSTSGVAQVVLG 239
L Y+++T+ V GR G LKGFD +N++LD + E + + T Q LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQ--LG 72
Query: 240 LHIIRGDNVAIV 275
L + RG +V ++
Sbjct: 73 LVVCRGTSVVLI 84
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERV------FSSTSGVAQVVLG 239
L Y+++T+ V GR G LKGFD +N++LD + E + + T Q LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQ--LG 72
Query: 240 LHIIRGDNVAIV 275
L + RG +V ++
Sbjct: 73 LVVCRGTSVVLI 84
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 38.7 bits (86), Expect = 0.007
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.007
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 38.7 bits (86), Expect = 0.007
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.007
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.007
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.007
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.007
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.007
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.007
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 38.3 bits (85), Expect = 0.009
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 230
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPEREEKR 65
Query: 231 VLGLHIIRGDNV 266
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 37.5 bits (83), Expect = 0.016
Identities = 20/66 (30%), Positives = 43/66 (65%)
Frame = +3
Query: 90 VNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVA 269
+++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG+++
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRGNSII 56
Query: 270 IVGQID 287
++ ++
Sbjct: 57 MLEALE 62
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 35.5 bits (78), Expect = 0.063
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = +3
Query: 120 DGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------VLGLHIIRGDNV 266
DGR FIGT K FD+ +N+IL + E Q VLGL ++RG+N+
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 55
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 35.5 bits (78), Expect = 0.063
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 63 RMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQVVL 236
R LE +N+T+ + +DGR +G D+ N+IL + E + S S VL
Sbjct: 40 RARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVL 99
Query: 237 GLHIIRGDNVAIVGQIDESI 296
GL ++ G ++ + ES+
Sbjct: 100 GLAMVPGHHIVSIEVQRESL 119
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 35.5 bits (78), Expect = 0.063
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 63 RMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQVVL 236
R LE +N+T+ + +DGR +G D+ N+IL + E + S S VL
Sbjct: 40 RARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVL 99
Query: 237 GLHIIRGDNVAIVGQIDESI 296
GL ++ G ++ + ES+
Sbjct: 100 GLAMVPGHHIVSIEVQRESL 119
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 35.5 bits (78), Expect = 0.063
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 63 RMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQVVL 236
R LE +N+T+ + +DGR +G D+ N+IL + E + S S VL
Sbjct: 88 RARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVL 147
Query: 237 GLHIIRGDNVAIVGQIDESI 296
GL ++ G ++ + ES+
Sbjct: 148 GLAMVPGHHIVSIEVQRESL 167
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 35.5 bits (78), Expect = 0.063
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 63 RMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQVVL 236
R LE +N+T+ + +DGR +G D+ N+IL + E + S S VL
Sbjct: 40 RARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVL 99
Query: 237 GLHIIRGDNVAIVGQIDESI 296
GL ++ G ++ + ES+
Sbjct: 100 GLAMVPGHHIVSIEVQRESL 119
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 35.5 bits (78), Expect = 0.063
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 63 RMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQVVL 236
R LE +N+T+ + +DGR +G D+ N+IL + E + S S VL
Sbjct: 40 RARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVL 99
Query: 237 GLHIIRGDNVAIVGQIDESI 296
GL ++ G ++ + ES+
Sbjct: 100 GLAMVPGHHIVSIEVQRESL 119
>Y08262-1|CAA69589.1| 914|Homo sapiens SCA2 protein.
Length = 914
Score = 35.1 bits (77), Expect = 0.083
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 39 FEFIYKIIRMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSG 218
F+ IY +RM L + V V +G + G K + +++LD +HE+ S+SG
Sbjct: 178 FDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSG 237
>U70323-1|AAB19200.1| 1312|Homo sapiens ataxin-2 protein.
Length = 1312
Score = 35.1 bits (77), Expect = 0.083
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 39 FEFIYKIIRMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSG 218
F+ IY +RM L + V V +G + G K + +++LD +HE+ S+SG
Sbjct: 258 FDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSG 317
>BC111757-1|AAI11758.1| 1127|Homo sapiens ATXN2 protein protein.
Length = 1127
Score = 35.1 bits (77), Expect = 0.083
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 39 FEFIYKIIRMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSG 218
F+ IY +RM L + V V +G + G K + +++LD +HE+ S+SG
Sbjct: 48 FDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSG 107
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 34.3 bits (75), Expect = 0.15
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 138 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 284
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 34.3 bits (75), Expect = 0.15
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 138 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 284
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 34.3 bits (75), Expect = 0.15
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 138 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 284
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 34.3 bits (75), Expect = 0.15
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 138 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 284
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 34 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 79
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 34.3 bits (75), Expect = 0.15
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 138 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 284
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 34.3 bits (75), Expect = 0.15
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 138 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 284
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 34.3 bits (75), Expect = 0.15
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 138 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 284
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>D79997-1|BAA11492.2| 656|Homo sapiens KIAA0175 protein.
Length = 656
Score = 31.9 bits (69), Expect = 0.77
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +3
Query: 141 TLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQIDESIDSRLDLGN 320
T+K +D+ + E HE + T G A+V L HI+ G+ VAI ++ S DL
Sbjct: 5 TMKDYDELLKYY--ELHETI--GTGGFAKVKLACHILTGEMVAIKIMDKNTLGS--DLPR 58
Query: 321 IKAE 332
IK E
Sbjct: 59 IKTE 62
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 31.1 bits (67), Expect = 1.4
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSST-SGVAQVVLGLHIIR 254
++ + + ++ + +GTL GFD +N++L++ E F T G L ++
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE--FEITPEGRRITKLDQILLN 75
Query: 255 GDNVAIV 275
G+N+ ++
Sbjct: 76 GNNITML 82
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 31.1 bits (67), Expect = 1.4
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSST-SGVAQVVLGLHIIR 254
++ + + ++ + +GTL GFD +N++L++ E F T G L ++
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE--FEITPEGRRITKLDQILLN 75
Query: 255 GDNVAIV 275
G+N+ ++
Sbjct: 76 GNNITML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 31.1 bits (67), Expect = 1.4
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSST-SGVAQVVLGLHIIR 254
++ + + ++ + +GTL GFD +N++L++ E F T G L ++
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE--FEITPEGRRITKLDQILLN 75
Query: 255 GDNVAIV 275
G+N+ ++
Sbjct: 76 GNNITML 82
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 30.7 bits (66), Expect = 1.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 111 ITSDGRNFIGTLKGFDQTINII 176
I DGR FIGT K FD+ +N+I
Sbjct: 60 ILQDGRVFIGTFKAFDKHMNMI 81
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 30.7 bits (66), Expect = 1.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 111 ITSDGRNFIGTLKGFDQTINII 176
I DGR FIGT K FD+ +N+I
Sbjct: 60 ILQDGRVFIGTFKAFDKHMNMI 81
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = +3
Query: 123 GRNFIGTLKGFDQTINIILDESHERV------FSSTSGVAQVVLGLHIIRGDNVAIV 275
GR G LKGFD +N++LD + E + + T Q LGL + RG +V ++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQ--LGLVVCRGTSVVLI 126
>BC014039-1|AAH14039.1| 651|Homo sapiens maternal embryonic leucine
zipper kinase protein.
Length = 651
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 144 LKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQIDESIDSRLDLGNI 323
+K +D+ + E HE + T G A+V L HI+ G+ VAI ++ S DL I
Sbjct: 1 MKDYDELLKYY--ELHETI--GTGGFAKVKLACHILTGEMVAIKIMDKNTLGS--DLPRI 54
Query: 324 KAE 332
K E
Sbjct: 55 KTE 57
>AL442063-1|CAI16995.2| 651|Homo sapiens maternal embryonic leucine
zipper kinase protein.
Length = 651
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 144 LKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQIDESIDSRLDLGNI 323
+K +D+ + E HE + T G A+V L HI+ G+ VAI ++ S DL I
Sbjct: 1 MKDYDELLKYY--ELHETI--GTGGFAKVKLACHILTGEMVAIKIMDKNTLGS--DLPRI 54
Query: 324 KAE 332
K E
Sbjct: 55 KTE 57
>AL354932-1|CAI11034.2| 651|Homo sapiens maternal embryonic leucine
zipper kinase protein.
Length = 651
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 144 LKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQIDESIDSRLDLGNI 323
+K +D+ + E HE + T G A+V L HI+ G+ VAI ++ S DL I
Sbjct: 1 MKDYDELLKYY--ELHETI--GTGGFAKVKLACHILTGEMVAIKIMDKNTLGS--DLPRI 54
Query: 324 KAE 332
K E
Sbjct: 55 KTE 57
>AK222811-1|BAD96531.1| 651|Homo sapiens maternal embryonic leucine
zipper kinase variant protein.
Length = 651
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 144 LKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQIDESIDSRLDLGNI 323
+K +D+ + E HE + T G A+V L HI+ G+ VAI ++ S DL I
Sbjct: 1 MKDYDELLKYY--ELHETI--GTGGFAKVKLACHILTGEMVAIKIMDKNTLGS--DLPRI 54
Query: 324 KAE 332
K E
Sbjct: 55 KTE 57
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,256,129
Number of Sequences: 237096
Number of extensions: 930962
Number of successful extensions: 1507
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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