Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26e16
(392 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 120 3e-28
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 53 6e-08
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 46 7e-06
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 40 6e-04
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 40 6e-04
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 40 6e-04
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 33 0.096
Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 32 0.13
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 3.6
Z81030-14|CAJ43441.1| 75|Caenorhabditis elegans Hypothetical p... 27 4.8
U00064-1|AAD31935.1| 845|Caenorhabditis elegans Hypothetical pr... 27 6.3
AC024796-8|AAK29897.2| 103|Caenorhabditis elegans Hypothetical ... 27 6.3
U80032-1|AAB53879.2| 568|Caenorhabditis elegans Phosphodiestera... 26 8.4
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 120 bits (290), Expect = 3e-28
Identities = 52/94 (55%), Positives = 73/94 (77%)
Frame = +3
Query: 66 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 245
M S L+ Y+N+ V+V+T DGR +G LKGFDQ IN++++++HER +S T GV LGL+
Sbjct: 1 MTSTLDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLY 60
Query: 246 IIRGDNVAIVGQIDESIDSRLDLGNIKAEPLGPM 347
IIRG+NVAI+G+IDE +D R+DL N+KA PL P+
Sbjct: 61 IIRGENVAIIGEIDEELDKRVDLENVKAAPLAPI 94
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 53.2 bits (122), Expect = 6e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Frame = +3
Query: 69 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHI 248
A L +++ + V+ DGR IG L+ DQ N+IL++ ER F + G +
Sbjct: 11 AISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVE-KYFCETGQGFML 69
Query: 249 IRGDNVAIVGQIDESIDSRL 308
IRG+NV + G+ID++I++ L
Sbjct: 70 IRGENVELAGEIDDTIETGL 89
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 46.4 bits (105), Expect = 7e-06
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Frame = +3
Query: 87 YVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE------RVFSSTSGVAQVVLGLHI 248
++N + +I DGR FIG K FD+ +NI+L E E + T G + +LGL +
Sbjct: 12 HLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVL 71
Query: 249 IRGDNV 266
+RG+++
Sbjct: 72 VRGEHI 77
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 39.9 bits (89), Expect = 6e-04
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFS----STSGVAQVVLGLH 245
L ++++ + V GR G L+GFDQ +N++LD+ E + S G LGL
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLI 75
Query: 246 IIRGDNVAIVGQID 287
+ RG + +V D
Sbjct: 76 VARGTAITVVSPAD 89
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 39.9 bits (89), Expect = 6e-04
Identities = 21/66 (31%), Positives = 40/66 (60%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ Y+++ + + + R G L+GFD +N+++DE+ E + G V LG+ +IRG
Sbjct: 9 LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE--YQKDGG--SVNLGMTVIRG 64
Query: 258 DNVAIV 275
++V I+
Sbjct: 65 NSVVIM 70
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 39.9 bits (89), Expect = 6e-04
Identities = 21/66 (31%), Positives = 40/66 (60%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
L+ Y+++ + + + R G L+GFD +N+++DE+ E + G V LG+ +IRG
Sbjct: 9 LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE--YQKDGG--SVNLGMTVIRG 64
Query: 258 DNVAIV 275
++V I+
Sbjct: 65 NSVVIM 70
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/66 (21%), Positives = 35/66 (53%)
Frame = +3
Query: 78 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 257
++ + + VI + + +GTL GFD +N++L++ E ++ G L ++ G
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVE-YENTADGKRMTKLDTILLNG 76
Query: 258 DNVAIV 275
+++ ++
Sbjct: 77 NHITML 82
>Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical
protein Y49E10.15 protein.
Length = 90
Score = 32.3 bits (70), Expect = 0.13
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 138 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIV 275
G + GFD+ +N++ DE+ E V T G ++ G +++GDN+ ++
Sbjct: 41 GYIIGFDEFMNVVFDEA-EEVNMKTKGRNKI--GRILLKGDNITLI 83
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 322 MFPRSNLLSIDSSICPTIAT 263
+FP LL+ DS +CP I T
Sbjct: 277 LFPEEQLLTCDSEVCPFILT 296
>Z81030-14|CAJ43441.1| 75|Caenorhabditis elegans Hypothetical
protein C01G10.17 protein.
Length = 75
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 65 NGFWTRKLRESNSVGNNFGWT*FYWHP*GL*PNNKYYF 178
+ ++T +N+ NN G+T +Y++P NN YY+
Sbjct: 18 DAYYTYYYYPNNNYNNNNGYTTYYYYPNN--NNNGYYY 53
>U00064-1|AAD31935.1| 845|Caenorhabditis elegans Hypothetical
protein ZC155.3 protein.
Length = 845
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 114 TSDGRNFI---GTLKGFDQTINIILDESHERVFSSTSG 218
+SD +N I + + +N+ ESHER+ SST G
Sbjct: 578 SSDSQNSIRSASSCSSSSRLLNVAKIESHERIHSSTGG 615
>AC024796-8|AAK29897.2| 103|Caenorhabditis elegans Hypothetical
protein Y48G1C.9 protein.
Length = 103
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 87 YVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHER 197
Y+ + + +DGR GT+ D+ N++ +++ ER
Sbjct: 30 YIGKRYEIRMTDGRYIRGTMIATDKDANMVFNKADER 66
>U80032-1|AAB53879.2| 568|Caenorhabditis elegans Phosphodiesterase
protein 5 protein.
Length = 568
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +3
Query: 84 NYVNQTVSVITSDGRNFIGTLKGFD--QTINII 176
++ NQTV+++ DG N + +L D +T+++I
Sbjct: 412 HHFNQTVTILQQDGHNILKSLSSEDYKKTLSLI 444
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,173,161
Number of Sequences: 27780
Number of extensions: 153585
Number of successful extensions: 370
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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