Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26e14
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 26 1.4
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 2.4
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar... 24 5.5
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 24 5.5
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 24 7.3
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 24 7.3
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p... 24 7.3
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar... 24 7.3
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 23 9.6
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 23 9.6
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 1.4
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 100 EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYT 273
E +FTL+ ++E G + + DIA +L++++ +Q Y+ Y+ G+ P++
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQIRTQYEGSGYR--YNSLGAWPFS 441
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 296 LTTLSGAGVYGIDPDSLYVVLYFLS 222
L+ L+ Y +DPD +Y +L FLS
Sbjct: 800 LSALASTIGYKLDPDDVYNILSFLS 824
>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
factor|Schizosaccharomyces pombe|chr 3|||Manual
Length = 203
Score = 24.2 bits (50), Expect = 5.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 282 WSRGIWYRPRLAVRRFVFFVNINYH 208
W+ +W P + + V+F IN+H
Sbjct: 111 WNWTLWLTPPETIAKMVWFPLINHH 135
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 24.2 bits (50), Expect = 5.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 190 VNCKQAVIVNVDKKYKTTY 246
+ CK A +VN+ +K KT Y
Sbjct: 272 LECKTAKVVNITQKPKTKY 290
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 242 VVLYFLSTLTITACLQFTYFKLL 174
+VLYFL+ L TA +TYF L
Sbjct: 636 IVLYFLTNLKRTAGGFWTYFLFL 658
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 23.8 bits (49), Expect = 7.3
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 139 NLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYK--TTYSESGSIPYTPAPDN 288
N+ ++F ++ ++K+ V K+ T Y++ GSI P PD+
Sbjct: 114 NIGLEFAEPHLSKAIKFSKIDTPVQPKTWKRQPGWTKYAKDGSISCVPYPDS 165
>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 23.8 bits (49), Expect = 7.3
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = -1
Query: 288 VVWSRGIWYRPRLAVRRFVFFVNINYHS 205
V +S G+W+ P + + + NY +
Sbjct: 140 VTYSAGVWHAPMVTIGKETMLAAFNYEN 167
>SPBP8B7.08c |||leucine carboxyl methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 310
Score = 23.8 bits (49), Expect = 7.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 97 GEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNC 198
G DT RY+ E G +KF+ D Y NC
Sbjct: 77 GTDTRVFRYISEYGPENLKFIEFDF-----YPNC 105
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 23.4 bits (48), Expect = 9.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 91 KFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQ 204
K E+ TL +E N K+ + + +YVNCKQ
Sbjct: 513 KISENPTTLSSKVENKNEPKTGENKEPSQTNEYVNCKQ 550
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 204 LFTIYIF*TAGDVFS 160
+FTIYI GDVFS
Sbjct: 241 VFTIYILTRGGDVFS 255
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,224,783
Number of Sequences: 5004
Number of extensions: 20766
Number of successful extensions: 59
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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