Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26e14
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    24   0.57 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   7.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   9.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   9.4  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.8 bits (49), Expect = 0.57
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 254 DSLYVVLYFLS-TLTITACLQFTY 186
           +S  ++L+ LS T+TI  C  FTY
Sbjct: 3   NSQILILFILSLTITIVMCQTFTY 26


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 165 FSHKFDLQVSLLEH 124
           +SH+ D+ V LL+H
Sbjct: 151 YSHQTDVWVELLKH 164


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 120 IRARARKPASQIC 158
           +R R   PASQ+C
Sbjct: 617 VRPRYISPASQVC 629


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 120 IRARARKPASQIC 158
           +R R   PASQ+C
Sbjct: 707 VRPRYISPASQVC 719


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,536
Number of Sequences: 438
Number of extensions: 1338
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)