Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26e11
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...   186   2e-48
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   1.6  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    27   1.6  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   2.1  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    25   6.5  

>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score =  186 bits (453), Expect = 2e-48
 Identities = 83/139 (59%), Positives = 105/139 (75%)
 Frame = +2

Query: 134 TDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELKR 313
           +DFY+RYY GH G+FGHEFLEF++  DG  RYANNSNY+ND++IRKE +V   V+ E++R
Sbjct: 2   SDFYVRYYSGHHGRFGHEFLEFDYHSDGLARYANNSNYRNDSLIRKEMFVSELVLKEVQR 61

Query: 314 IIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGF 493
           I+ DSEI+ E D  WP  ++ G+QELEI +  +HI F T K GSL DV  S DPEGL+ F
Sbjct: 62  IVDDSEIIKESDESWPPENKDGKQELEIRMNGKHIMFETCKLGSLADVQNSDDPEGLKVF 121

Query: 494 YYLVQDLKCLVFSLIGLHF 550
           YYL+QDLK L FSLI L+F
Sbjct: 122 YYLIQDLKALCFSLISLNF 140


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 304 LVHYTRVNIGFFTYHCIVFIVRIIGITQFPVRPEFKFEKFVAK 176
           LVHY+    G+  Y  I  + ++I   Q PV+ E  F+K+ +K
Sbjct: 399 LVHYS----GYEEYQLISVVKKMINYLQKPVQHEAFFKKYASK 437


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 155 YVGHKGKFGHEFLEFEFRPD-GKLRYANNSNYKNDTMIR 268
           +V  KG F H  LEF   PD G    ANN   +N  +++
Sbjct: 13  WVKSKGAFVHPSLEFSVIPDAGSCVLANNDINENTVLLK 51


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/84 (25%), Positives = 38/84 (45%)
 Frame = -2

Query: 343 FVHDFGINYDSF*LVHYTRVNIGFFTYHCIVFIVRIIGITQFPVRPEFKFEKFVAKLSLV 164
           ++H FG  Y+SF         + F+ +   V  +R  GIT   +      +  +  +  V
Sbjct: 442 YLHLFGSIYNSF-----REERVMFWIFPIAVQFMR--GITVGVIGSSGSAQLAIFFILEV 494

Query: 163 SNIISYVKIRRHFAQSFKFILENF 92
           +N+++Y  +R HF Q+    L  F
Sbjct: 495 ANVVAYAYVRPHFPQTSMNTLNTF 518


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 222 SFPSGRNSNSRNSWPNFPLC 163
           SFP     NS   +PN P+C
Sbjct: 44  SFPKASKPNSNQPYPNGPVC 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,371
Number of Sequences: 5004
Number of extensions: 45985
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)