Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26e06
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    87   2e-18
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    82   5e-17
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.34 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   3.2  
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.6  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   7.3  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   7.3  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.7  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 41/59 (69%), Positives = 48/59 (81%)
 Frame = +2

Query: 44  APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 220
           AP    +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLR
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLR 66


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 82.2 bits (194), Expect = 5e-17
 Identities = 38/55 (69%), Positives = 45/55 (81%)
 Frame = +2

Query: 56  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 220
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLR
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLR 58


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 68  KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 193
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +2

Query: 44  APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 217
           APK +  KK  KT++  + +  ++        G K+ +K +R+G+  LVI+A +  P+
Sbjct: 33  APKKLN-KKMMKTVKKASKQKHILR-------GVKEVVKAVRKGEKGLVILAGDISPM 82


>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 162 LFDKAKQSWLSSLKMLLR*GEATEK*SFPILV--KGMHMESY*QRSMDSLCGLVKQFAK 332
           +FD +++S L+S+K   R      K + PIL+  K  H  ++ +   + +    +++AK
Sbjct: 89  MFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGTKYDHFMTFPREDQEEITKQARRYAK 147


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 456 NCIRFLILFCWITMWGTYGVVFKLDTSLWQ 545
           N + F+I+F  +T W    ++ KL  SLW+
Sbjct: 50  NTVVFIIVF--LTGWAAKSIIVKLLPSLWR 77


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 67  LCCNHFGSVNANESSPRAQMEK 2
           + C+H  S+NAN S+ RA M +
Sbjct: 146 VACDHEFSINANVSAARALMNR 167


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 190 YHR*KCSSAKVRLLRSRVSQYLSKGCIWSLTDKEVWIPFVV**NSSQK*G 339
           Y    CSS   ++L S +S+ L +  +W    K      V+   SSQ  G
Sbjct: 507 YRMSHCSSNSNKVLASEISESLRRDLLWERRQKAAMNSAVLRRQSSQSSG 556


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 443 INSIKLHSFLNTVLLDHNVGNLWSSL 520
           I+SI +H F +  LL H  G  WS+L
Sbjct: 247 ISSIFVHPFKDPSLLVHFTGLKWSTL 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,958
Number of Sequences: 5004
Number of extensions: 44634
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)