Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26e06
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 83 2e-16
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 76 2e-14
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 73 2e-13
03_05_0830 + 28034179-28035492 29 2.4
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 28 4.3
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 27 7.5
11_02_0014 - 7352619-7352918,7353173-7353418 27 9.9
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 27 9.9
07_03_1085 - 23851852-23853165 27 9.9
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 82.6 bits (195), Expect = 2e-16
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = +2
Query: 53 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 220
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLR
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLR 56
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/55 (63%), Positives = 42/55 (76%)
Frame = +2
Query: 56 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 220
V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLR
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLR 97
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/49 (69%), Positives = 37/49 (75%)
Frame = +2
Query: 74 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 220
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLR
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLR 174
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 122 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 205
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 440 IINSIKLHSFLNTVLLDHNVGNLWSSL*TRYF 535
I++ I +H L T+ D +V N W + YF
Sbjct: 790 ILDCIDVHKLLETIFGDQDVANSWKARCAEYF 821
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 104 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPL 217
L LV ++ + CL G K+ +K++R+G+ L IIA N P+
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI 73
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 154 FENSSTRQSKAGYHR*KCSSAKVRLLRSRVSQYL 255
F ST K +HR SS VR +RSR QY+
Sbjct: 133 FPRESTTTGK--FHRLDGSSVNVRFMRSREDQYI 164
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 56 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 211
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 122 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 205
+GKY G TLK L G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,721
Number of Sequences: 37544
Number of extensions: 249448
Number of successful extensions: 482
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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