Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26e06
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...    80   9e-16
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   0.31 
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical ...    30   1.3  
AB071420-1|BAB86940.1|  401|Caenorhabditis elegans 2-amino-3-car...    30   1.3  
Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine rece...    27   8.9  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score = 80.2 bits (189), Expect = 9e-16
 Identities = 38/56 (67%), Positives = 45/56 (80%)
 Frame = +2

Query: 53  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 220
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PPLR
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLR 56


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +2

Query: 110 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 205
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 26  GFISIYAPKMVAAKKQKKTIESINSRLALV 115
           GF +I  P  V AKK   ++E+IN+R  L+
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILI 167


>AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical
           protein Y71D11A.3b protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
 Frame = -3

Query: 353 LSSI*PYFCELFY*---TTK--GIHTSLSVRLHMHPFDKY-WE 243
           LS+I P FCE F     TTK  GI   LSV L +HP+D + W+
Sbjct: 200 LSTIMPGFCEFFENWGLTTKTPGICEELSVVLFVHPWDMHMWD 242


>AB071420-1|BAB86940.1|  401|Caenorhabditis elegans
           2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
           protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
 Frame = -3

Query: 353 LSSI*PYFCELFY*---TTK--GIHTSLSVRLHMHPFDKY-WE 243
           LS+I P FCE F     TTK  GI   LSV L +HP+D + W+
Sbjct: 200 LSTIMPGFCEFFENWGLTTKTPGICEELSVVLFVHPWDMHMWD 242


>Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical
           protein K07A12.1 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 483 CWITMWGTYGVVFKLD 530
           CW T W T  ++FKLD
Sbjct: 244 CWETAWNTAKMIFKLD 259


>U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine
           receptor, class v protein31 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 374 TTYTILSLSSI*PYFCELFY*TTKGIHTSLSVRLHMHPFDKYW 246
           T YTIL   SI      +FY TT G+ T   +R  ++ +  ++
Sbjct: 43  TFYTILMQHSIADICIMIFYTTTWGLRTKPGIREMLYTYQHFY 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,516,975
Number of Sequences: 27780
Number of extensions: 239281
Number of successful extensions: 482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)