Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d24
         (393 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   4.4  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    20   7.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   7.6  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 332 PVLNTEHFDWV 300
           P ++TEH DW+
Sbjct: 92  PPISTEHCDWL 102


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 84  STDVPPSKIIFIDDFMNDKN 25
           S DVP    I  DD +N+ N
Sbjct: 188 SKDVPQMITITFDDAINNNN 207


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 295 ILFIIYTDSNLRSHLPSVVMRYGVIIHGCRDFHD 194
           I+F+ +T  +L  HL + +M   +      D HD
Sbjct: 125 IVFVSHTVEHLLGHLQTDLMGQSIFNITSPDDHD 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,603
Number of Sequences: 336
Number of extensions: 1967
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8330471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)