Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d24
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    27   1.4  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.4  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   4.2  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    24   7.3  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    24   9.7  

>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 310 LTGFFILFIIYTDSNLRSHLPSVVMRYGVIIHG 212
           +TGF+I  IIY    +  H P  + +   + HG
Sbjct: 192 ITGFYIFAIIYAAGGIPHHKPPNLFKEMPLAHG 224


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 286 IIYTDSNLRSHLPSVVMRYGVIIHGCRDFHDMATITELNLSH 161
           ++Y+ S L   L S+    G++I G  + +D A ITE  + H
Sbjct: 261 MVYSSSKL-GLLDSIKAELGIVIDGKIESNDAADITEKEILH 301


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 93  QTTSTDVPPSKIIFIDDFMNDKN 25
           Q     VPP ++  +DD+ N KN
Sbjct: 46  QIAKLSVPPHEMRVVDDYSNSKN 68


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 308 QSVQYSIPGILHFIQHEWA 364
           Q++   IPGI+ FI++ W+
Sbjct: 294 QTIYPLIPGIIEFIRNSWS 312


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 319 LNTLTGFFILFIIYTDSNLRS--HLPSVVMRYGVIIHGCRDFHD 194
           ++TLT  F+L  I  +  LRS  +L SV+   G ++   RD+ D
Sbjct: 127 IDTLTAIFVLSAIPREKQLRSIKNLASVIKPGGHLVF--RDYCD 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,901
Number of Sequences: 5004
Number of extensions: 31081
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)