Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d24
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1763 - 29316969-29318120                                         29   1.8  
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53...    28   3.1  
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45...    28   3.1  
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113...    28   3.1  
01_06_0290 + 28235024-28235037,28235160-28235643                       27   7.1  
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    26   9.4  

>07_03_1763 - 29316969-29318120
          Length = 383

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 23/54 (42%), Positives = 26/54 (48%)
 Frame = -1

Query: 306 LGSSFCLLFTLTPI*DPTCPPL**DTELSSMAVGIFMTWPPLPN*TCHTPIITM 145
           LGSS   +F   P   P  P L  DT+   + VG     PPLPN  C  P ITM
Sbjct: 85  LGSS---IFATRP---PHTPALVYDTDTGGLTVG-----PPLPNKLCGGPNITM 127


>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
            538601-538860,539950-540073,540978-541310,541447-541531,
            541683-541768,541843-541941,542041-542180,542717-543043,
            543163-543774,543887-543971,543972-544067,544147-544500,
            544536-544559,544597-544707,544811-544894,545468-545546,
            546122-546279,546412-546528,546622-546780,546857-546939,
            547525-547627,549184-549495
          Length = 1925

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 250  PSVVMRYGVIIHGCRDFHDMATITEL 173
            P  V  +GV++ GC    DM T+ EL
Sbjct: 1543 PPDVRTFGVVVAGCMSAGDMGTVREL 1568


>11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-459581,
            459924-460183,461834-461918,462587-462919,463053-463137,
            463289-463374,463455-463556,463656-463795,464332-464658,
            464778-465389,465502-465586,465587-465682,465762-466115,
            466212-466322,466426-466509,467086-467164,467742-467899,
            468034-468150,468240-468398,468475-468557,469098-469200,
            470784-471080
          Length = 1899

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 250  PSVVMRYGVIIHGCRDFHDMATITEL 173
            P  V  +GV++ GC    DM T+ EL
Sbjct: 1518 PPDVRTFGVVVAGCMSAGDMGTVREL 1543


>05_03_0425 -
           13808840-13809414,13809552-13809765,13810268-13811317,
           13811616-13811687,13812075-13812334,13812647-13812731
          Length = 751

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 250 PSVVMRYGVIIHGCRDFHDMATITEL 173
           P  +  +GV++ GC    DM T+ EL
Sbjct: 399 PPDIRTFGVVVSGCMSAGDMGTVREL 424


>01_06_0290 + 28235024-28235037,28235160-28235643
          Length = 165

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 7  SFRHAIIFVIHEIVDKNYFRWWHICGRCL 93
          + +  I F+I E++ + +F W  + GRCL
Sbjct: 6  TLKRTIQFLIKELLKECFFIWLAVKGRCL 34


>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
            28316548-28316615,28316693-28316757,28316922-28320162,
            28320239-28320301,28320756-28320824,28321020-28321055,
            28322035-28322280,28322531-28322569,28322695-28322816,
            28322921-28323004,28323100-28323235,28323486-28323535,
            28323620-28323756,28323863-28323951,28324847-28324954,
            28325080-28325163,28325841-28325888,28326036-28326153,
            28328262-28328347
          Length = 2168

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/49 (20%), Positives = 25/49 (51%)
 Frame = -3

Query: 229  GVIIHGCRDFHDMATITELNLSHTYYNYDQELFKMKY*HIIKYYFSNNV 83
            G ++H   +FH   ++++L +S + + Y   L +      + Y + ++V
Sbjct: 2103 GQLLHNSAEFHITQSLSDLGISDSEFTYFDNLPQEAETEFVPYQYDSDV 2151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,006,563
Number of Sequences: 37544
Number of extensions: 178758
Number of successful extensions: 323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)