Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d24
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-10|CAA94901.2|  678|Caenorhabditis elegans Hypothetical p...    46   1e-05
Z71177-11|CAA94873.2|  678|Caenorhabditis elegans Hypothetical p...    46   1e-05
U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical p...    31   0.29 

>Z71181-10|CAA94901.2|  678|Caenorhabditis elegans Hypothetical
           protein K07C5.8 protein.
          Length = 678

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = +2

Query: 281 NNKQNEEPSQSVQYSIPGILHFIQHEWARFELXRSXW 391
           N+K  +E ++  QY++ GILHFIQHEW + EL R+ W
Sbjct: 12  NDKAKDETTRP-QYTMSGILHFIQHEWTKNELDRTRW 47


>Z71177-11|CAA94873.2|  678|Caenorhabditis elegans Hypothetical
           protein K07C5.8 protein.
          Length = 678

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = +2

Query: 281 NNKQNEEPSQSVQYSIPGILHFIQHEWARFELXRSXW 391
           N+K  +E ++  QY++ GILHFIQHEW + EL R+ W
Sbjct: 12  NDKAKDETTRP-QYTMSGILHFIQHEWTKNELDRTRW 47


>U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical
           protein C44B7.11 protein.
          Length = 824

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 213 PWMITPYLITTEGKW---DLKLESV*IINKMKNPVKVFSIQYR 332
           PW  TP+L  T+G+    ++++ SV    K K+PVK+  I  R
Sbjct: 645 PWCETPFLFPTKGRLNERNIRVRSVDERLKFKHPVKILGISKR 687


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,088,619
Number of Sequences: 27780
Number of extensions: 173985
Number of successful extensions: 321
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)