Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d23
         (202 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q90Y13 Cluster: STAT6; n=7; Clupeocephala|Rep: STAT6 - ...    30   8.6  
UniRef50_Q4S961 Cluster: Chromosome 3 SCAF14700, whole genome sh...    30   8.6  
UniRef50_Q6CG37 Cluster: F-box protein COS111; n=1; Yarrowia lip...    30   8.6  

>UniRef50_Q90Y13 Cluster: STAT6; n=7; Clupeocephala|Rep: STAT6 -
           Tetraodon fluviatilis (Puffer fish)
          Length = 794

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 151 PLKLQHFIKRTMRSQLWMHVYIENFMHEFQANVV 50
           P++++HF+   + SQ W    +EN   E QA V+
Sbjct: 29  PIEVRHFLAEWIESQRWEDFTLENVEQESQARVL 62


>UniRef50_Q4S961 Cluster: Chromosome 3 SCAF14700, whole genome
           shotgun sequence; n=3; Euteleostomi|Rep: Chromosome 3
           SCAF14700, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 721

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -1

Query: 151 PLKLQHFIKRTMRSQLWMHVYIENFMHEFQA 59
           P++++H++ + +  QLW  + +EN   EF+A
Sbjct: 27  PIEVRHYLSQWIEGQLWDAIDLENPQEEFKA 57


>UniRef50_Q6CG37 Cluster: F-box protein COS111; n=1; Yarrowia
           lipolytica|Rep: F-box protein COS111 - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 555

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 154 KPLKLQHFIKRTMR-SQLWMHVYIENFMHEFQANVVQATRDATAPL 20
           KP+K +  +   +R S++W+  Y +N +++    V++A R   +PL
Sbjct: 347 KPVKKRRSVTTAIRESRIWLSFYKKNKLYQASEEVLEALRKQNSPL 392


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,951,602
Number of Sequences: 1657284
Number of extensions: 2827518
Number of successful extensions: 7627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7626
length of database: 575,637,011
effective HSP length: 46
effective length of database: 499,401,947
effective search space used: 9988038940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)