Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26d23
(202 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 1.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 1.8
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 24 2.4
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 24 3.2
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 23 4.2
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 5.5
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 23 7.3
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 23 7.3
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb... 22 9.7
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 22 9.7
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 22 9.7
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 22 9.7
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 181 RVHQQRAHEKPLKLQHFIKRT 119
R H +R H K +KL++ I+RT
Sbjct: 250 RHHVRRTHGKVIKLENCIRRT 270
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 181 RVHQQRAHEKPLKLQHFIKRT 119
R H +R H K +KL++ I+RT
Sbjct: 250 RHHVRRTHGKVIKLENCIRRT 270
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/45 (26%), Positives = 17/45 (37%)
Frame = -1
Query: 175 HQQRAHEKPLKLQHFIKRTMRSQLWMHVYIENFMHEFQANVVQAT 41
H HE HF+K T++ + H N HE + T
Sbjct: 49 HHSSKHELKKLKSHFLKDTLKHKRNHHANSNNEKHENSDKKIHTT 93
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 23.8 bits (49), Expect = 3.2
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +2
Query: 83 FNINVHPKLRTHRSFNKMLKFQWFFVGALLV 175
+N N HP + + +++F W + AL++
Sbjct: 59 YNYNSHPIAAKYTTHGSIVEFIWTLIPALIL 89
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 143 FQWFFVGALLVNAARALK 196
F WFF+ +L+ RALK
Sbjct: 241 FWWFFLSEILLMLPRALK 258
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 10 FNTQAVRSRLALPARHWPETRA*NFQYK 93
F+T +S LALP + P RA YK
Sbjct: 1102 FSTAKSKSPLALPMTYSPTERASFLSYK 1129
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 111 LSFGCTFILKILCTSFRPMSCRQRETRPHRL 19
++ C I+ + SF P Q E R HR+
Sbjct: 846 INLTCANIVILFDCSFNPFDDMQAEDRAHRV 876
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -2
Query: 111 LSFGCTFILKILCTSFRPMSCRQRETRPHRLRVKPKL 1
++ C ++ + SF P Q E R HR+ K ++
Sbjct: 843 INLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEV 879
>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 353
Score = 22.2 bits (45), Expect = 9.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 50 HDIGLKLVHKIFNINVHPKLRTHRSFNKMLKFQWFFVGAL 169
+D ++ HKIF IN T K L +VGAL
Sbjct: 143 NDSSSRMEHKIFPINTVEGTVTAHGREKKLTGVAVYVGAL 182
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 22.2 bits (45), Expect = 9.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 145 KLQHFIKRTMRSQLWMHVYIENFMHEFQANV 53
KLQ+ I R+ LW E E Q N+
Sbjct: 387 KLQNEIDECRRNLLWAESSCETIREENQKNI 417
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 116 HRSFNKMLKFQWFFVGALLVN 178
+RS K WFF+ +L+N
Sbjct: 2135 YRSLGKRNIVIWFFISQILIN 2155
>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 356
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/35 (25%), Positives = 16/35 (45%)
Frame = -1
Query: 184 GRVHQQRAHEKPLKLQHFIKRTMRSQLWMHVYIEN 80
G +H Q + L +QH + T R+ ++ N
Sbjct: 9 GFLHDQNPQVRMLAVQHLLPYTARNHPQFSIWFHN 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,428
Number of Sequences: 5004
Number of extensions: 12091
Number of successful extensions: 36
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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