Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26d23
(202 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 27 1.6
03_02_0036 + 5182345-5183511 26 3.6
06_02_0095 - 11672075-11672494 26 4.8
06_02_0091 - 11617950-11618333 26 4.8
03_04_0200 - 18401657-18402040 26 4.8
10_08_0950 + 21764902-21765912 25 6.4
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 25 6.4
09_06_0316 + 22262652-22263872 25 8.4
09_06_0313 + 22240971-22242176 25 8.4
07_03_1620 - 28180020-28180862 25 8.4
03_06_0037 + 31222963-31223886,31225172-31225786 25 8.4
01_05_0182 + 18989094-18989152,18989211-18989512,18990121-18991028 25 8.4
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 178 VHQQRAHEKPLKLQHFIKRTMRSQLWMHVYIENFMHEFQANVVQATR 38
+ QQRA E +KL KR L + +E +HE Q ++ TR
Sbjct: 442 IEQQRADEDVMKLVEDQKREKEDVLARMLQLEKELHEKQQLELEVTR 488
>03_02_0036 + 5182345-5183511
Length = 388
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 142 LQHFIKRTMRSQLWMHVYIENFMHEFQANVVQATRDATAPLA 17
L +KR SQL +HV ++ F E + A ++ AP A
Sbjct: 129 LDKCLKRARDSQLLLHVALQRFDDEEDNDAAAAGQEDAAPSA 170
>06_02_0095 - 11672075-11672494
Length = 139
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 104 KLRTHRSFNKMLKFQWFFVGALLVN 178
+L TH F L +Q FF+ +L++N
Sbjct: 96 ELETHGHFTVSLAYQMFFMASLVLN 120
>06_02_0091 - 11617950-11618333
Length = 127
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 104 KLRTHRSFNKMLKFQWFFVGALLVN 178
+L TH F L +Q FF+ +L++N
Sbjct: 84 ELETHGHFTVSLAYQMFFMASLVLN 108
>03_04_0200 - 18401657-18402040
Length = 127
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 104 KLRTHRSFNKMLKFQWFFVGALLVN 178
+L TH F L +Q FF+ +L++N
Sbjct: 84 ELETHGHFTVSLAYQMFFMASLVLN 108
>10_08_0950 + 21764902-21765912
Length = 336
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +2
Query: 8 GLTRKRCGRVSRCLHDIGLKLVHKIFNINVHPKLRTHRSFNKMLKFQWFF 157
G RCGR H G++ HKI + + R+ + +W F
Sbjct: 87 GAVTARCGRFPTATHKSGVQCRHKIEKLRKRYRAERARAAGRSKGPKWPF 136
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 29 GRVSRCLHDIGLKLVHKIFNINVHPKLR 112
G+V L ++G+ L + + +NV P LR
Sbjct: 414 GKVEATLSELGVTLSNAAYKLNVRPLLR 441
>09_06_0316 + 22262652-22263872
Length = 406
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 102 GCTFILKILCT-SFRPMSCRQRETRPHRLR 16
G + + K+L +FR +S + E+RPHR R
Sbjct: 302 GTSVLFKVLSAFAFRDISLTKIESRPHRHR 331
>09_06_0313 + 22240971-22242176
Length = 401
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 102 GCTFILKILCT-SFRPMSCRQRETRPHRLR 16
G + + K+L +FR +S + E+RPHR R
Sbjct: 294 GTSVLFKVLSAFAFRDISLTKIESRPHRHR 323
>07_03_1620 - 28180020-28180862
Length = 280
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 29 GRVSRCLHDIGLKLVHKIFNINVHP-KLRT 115
G V C H + + H +F + +HP + RT
Sbjct: 105 GAVPSCAHGLRCRYAHGVFELWLHPSRFRT 134
>03_06_0037 + 31222963-31223886,31225172-31225786
Length = 512
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 5 FGLTRKRCGRVSRCLHDIGLKL 70
FG+ R+RC + LH +GL L
Sbjct: 441 FGMGRRRCPGETLALHTVGLVL 462
>01_05_0182 + 18989094-18989152,18989211-18989512,18990121-18991028
Length = 422
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 102 GCTFILKILCT-SFRPMSCRQRETRPHRLR 16
G + + K+L +FR +S + E+RPHR R
Sbjct: 22 GTSVLFKVLSAFAFRDISLTKIESRPHRHR 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,093,058
Number of Sequences: 37544
Number of extensions: 76094
Number of successful extensions: 217
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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