Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d23
         (202 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    26   4.2  
AF036704-4|ABA00184.1|  352|Caenorhabditis elegans Hypothetical ...    25   5.6  
AC006748-3|AAF60513.2|  382|Caenorhabditis elegans Hypothetical ...    25   5.6  
AL034393-23|CAH19089.1|  274|Caenorhabditis elegans Hypothetical...    25   9.8  

>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
            F31C3.3 protein.
          Length = 2029

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 41   RCLHDIGLKLVHKIFNINVHPKLR--THRSFNKMLKFQWFFVG 163
            R +  +G   V + F +N+ P +   THR F+KM++F  FF G
Sbjct: 1815 RDMPPVGGISVKEHFELNIAPMVAEITHRLFDKMMRF--FFPG 1855


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 62  LKLVHKIFNINVHPKLRTHRSFNKMLKFQWFFVGALLVNAARALKK 199
           L LV    ++N++  L  +    ++ +F WFF    + +A R   K
Sbjct: 127 LHLVLNGLHVNIYNNLTKYTEIARIRRFDWFFENTNMNDARRPQTK 172


>AF036704-4|ABA00184.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK185.5 protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 178 VHQQRAHEKPLKLQHFIKRTMRSQLWMHVYIEN-FMH 71
           VH       PLK+ H I + +  +L M V++E  F+H
Sbjct: 307 VHIVMDENLPLKVTHDIAQKLEQKLMMLVFVERCFVH 343


>AC006748-3|AAF60513.2|  382|Caenorhabditis elegans Hypothetical
           protein Y39A3B.2 protein.
          Length = 382

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 201 FFFNARAAFTSSAPTKNH*NFNILLNERCVLSFGCTFILKILC 73
           +F NAR A+       N   FN+ ++ +  +S+G    L + C
Sbjct: 72  YFANARTAYFHKVTVHN---FNMFISPQGTISYGTRVTLNLAC 111


>AL034393-23|CAH19089.1|  274|Caenorhabditis elegans Hypothetical
           protein Y18D10A.26 protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 148 LKLQHFIKRTMRSQLWMHV 92
           LK ++F KRT   +LW HV
Sbjct: 225 LKTENFRKRTHFGKLWKHV 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,411,461
Number of Sequences: 27780
Number of extensions: 72127
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)