Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26d21
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 29 0.28
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 28 0.84
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.5
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 27 1.9
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 2.6
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 5.9
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.9
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 7.9
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 25 7.9
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 29.5 bits (63), Expect = 0.28
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 149 FLNYKVIASFQNVWRFHLFEECFDRVEHSLRGCSKHLDFSHS-LWASV 289
F N +VI + WR ++E + E SL+ + D H+ LW V
Sbjct: 383 FFNARVIIALYVEWRLRVYETMIIKGEESLKNLQRARDGPHNKLWLGV 430
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 27.9 bits (59), Expect = 0.84
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 253 LATTT*RMFNAIKAFFEQVKPPHILKASNNFVIKKILILLGL 128
L T +F AIK F K +++KA N + ++ LLG+
Sbjct: 224 LVTNCSLLFEAIKTTFGLEKDSYVVKAGNQLIQHGLIRLLGI 265
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 27.1 bits (57), Expect = 1.5
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Frame = -2
Query: 274 TVTEIKMLATTT*RMFNAIKAFFEQVKPPHILKASNNFVIKKILILLG-----LSNFNNL 110
T T + A+ F ++ + +V H+L+ S++ K L+LL +SN L
Sbjct: 172 TYTNSDLPASKQLESFISMNLSYSKVFFLHLLQHSDSSFNDKFLLLLANIPVTVSNVEVL 231
Query: 109 IYT*YSQEFIGFVTVGGISHTYFFLYGMRSEVV-TQH 2
+Y +E + + G S Y L + ++V T H
Sbjct: 232 LYLLQQEESLAQFDLNGKSFLYHMLVSLHNQVTNTSH 268
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 26.6 bits (56), Expect = 1.9
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Frame = +3
Query: 108 IRLLKFDNPSKISIFLITKLLLAFKMCGGFTCSKNALIALNILYVVVASI------LISV 269
I L K P K + IT+ L MC F + +IA+ + + ++ LIS+
Sbjct: 313 ILLPKLPLPEKNKLHFITQSLQTGVMCS-FLAFIDTVIAVKAISLQTNNLIRSNRELISL 371
Query: 270 TVYGQASSLVTNLPIVGGIL 329
SSL LPI GG L
Sbjct: 372 GAANIGSSLFCGLPICGGYL 391
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 305 LAHCRWYTSMWSISHLNLHIGACRSSQASPS 397
L HC +++ + +N H+ +C +S +SPS
Sbjct: 156 LVHCPACSNLVPHNQINQHLDSCLNSPSSPS 186
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 269 HSLWASVIPGYQLAHCRWYTSMWSISHLNLHI 364
+++W VI G L RW WS S L +++
Sbjct: 2205 NNVWFPVIFGLGLICPRWCLEFWSSSGLGINL 2236
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 153 LITKLLLAFKMCGGFTCSKN 212
+IT LLL F + GF CS N
Sbjct: 271 VITLLLLLFTIAIGFACSHN 290
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 236 LRGCSKHLDFSHSLWASVIPGYQLAHCRWYTSMWSISHLNLHI 364
L G + +HS W + G L RW W+ S++ L++
Sbjct: 2249 LLGVLAWISRTHS-WIICVFGVGLGAPRWLQQFWATSNIGLYL 2290
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 455 NRKLYQKQKE*YYHVKEQHNLVML 384
N + +KQ+ YH+ E NLV L
Sbjct: 84 NVRTVRKQRSSLYHISENRNLVRL 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,059
Number of Sequences: 5004
Number of extensions: 43476
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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