Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d21
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    30   0.75 
AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinas...    29   1.7  
U50070-3|AAR85909.1|  188|Caenorhabditis elegans Forkhead transc...    29   2.3  
AF022972-7|AAM29671.1|  124|Caenorhabditis elegans Hypothetical ...    28   3.0  
AL033536-7|CAA22137.2|  169|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    27   5.3  

>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 320 WYTSMWSISHLNLHIGACRSSQASPSYAVLL 412
           W+ +  + S LN H+   R+S  S SYAVL+
Sbjct: 80  WFQTEGNSSQLNFHMLIARTSSVSSSYAVLM 110


>AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinase
           protein 34 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 218 DRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCR 319
           D  E    GCS  L+ +HS +  ++ G +  HCR
Sbjct: 110 DLYEKITSGCSFSLEEAHSYFKQLVNGLKFLHCR 143


>U50070-3|AAR85909.1|  188|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 7, isoform c protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 146 YFLNYKVIASFQNVWRFHL-FEECFDRVEHSLRGCSKHLDFS 268
           Y  N K +  FQN  R +L   +CF RVE +++G    +D S
Sbjct: 7   YNNNMKQLIFFQNAVRHNLSLHKCFQRVEQNVKGAVWTVDDS 48


>AF022972-7|AAM29671.1|  124|Caenorhabditis elegans Hypothetical
           protein F10D2.8 protein.
          Length = 124

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 115 NLIYT*YSQEFIGFVTVGGISHTYFF 38
           +LIY+ YS  F+ F  + G SHT FF
Sbjct: 9   SLIYSTYSYNFLVFCPLFGHSHTKFF 34


>AL033536-7|CAA22137.2|  169|Caenorhabditis elegans Hypothetical
           protein Y53C10A.3 protein.
          Length = 169

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 200 LFEECFDRVEHSLRGCSKHLDFSH 271
           LF   F ++ H   GC  HL+FSH
Sbjct: 92  LFMCGFGKITHVSHGCHVHLEFSH 115


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 69  VTNPINS*EYYV*IRLLKFDNPSKISIFLITKLLLAFKMCGGFTCSKNALIALNI 233
           +T P ++  YY     L FD P   S   I+ L   ++    +T S+ ++I LN+
Sbjct: 484 MTFPADTKNYYSLRSTLVFDGPGLSSGCYISNLYQLYQTTNQWTSSQKSIIVLNL 538


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,909,921
Number of Sequences: 27780
Number of extensions: 245715
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)