Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d21
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   2.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.1  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   6.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   9.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.0  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 152 LNYKVIASFQNVWRFHLFEECFDRVEHSLRG 244
           +NY +   F ++ RF  F    D+V  S RG
Sbjct: 19  INYFIFLYFNSLVRFRRFTIELDKVLESPRG 49


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 320 WYTSMWSISHLN 355
           W T MW+ SHL+
Sbjct: 94  WMTLMWTDSHLS 105



 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 51  WEIPPTVTNPINS*EYY 101
           W++P   TNP N   YY
Sbjct: 303 WQLPHNSTNPPNILLYY 319


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 107 LHIILSRVYRVCDSGWNLPYIFFFIWDEIRSCDTT 3
           LH    RV  V  + W +  + F+     R+C TT
Sbjct: 558 LHKCFMRVENVKGAVWTVDEVEFYKRRPQRACSTT 592


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 56  DSTHCHKPYKLLRVLCVNQIVKI 124
           +S  C K  KLL+    N ++KI
Sbjct: 108 ESNSCKKSSKLLQCFIDNNLMKI 130


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 166 YC*LSKCVEVSLVR 207
           YC L KC+ V + R
Sbjct: 73  YCRLKKCIAVGMSR 86


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 166 YC*LSKCVEVSLVR 207
           YC L KC+ V + R
Sbjct: 122 YCRLKKCIAVGMSR 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,496
Number of Sequences: 438
Number of extensions: 2867
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)