Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26d18
(615 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 25 0.78
AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein. 24 1.0
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 24 1.0
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 1.8
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 2.4
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 23 3.1
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 23 3.1
DQ494417-1|ABF55368.1| 42|Apis mellifera telomerase reverse tr... 22 5.5
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 21 7.2
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 9.6
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 9.6
AB178034-1|BAD27112.1| 76|Apis mellifera apiceropsin protein. 21 9.6
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 24.6 bits (51), Expect = 0.78
Identities = 8/28 (28%), Positives = 12/28 (42%)
Frame = -1
Query: 84 WRVKNVILSKKTVHCNCWLALKNQHNTV 1
W KN + +CWL + HN +
Sbjct: 105 WNTKNCVNPYDRDSLSCWLQMTKHHNFI 132
>AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein.
Length = 104
Score = 24.2 bits (50), Expect = 1.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 112 SLPTPVANSPLSPVRQPPKSNIKPPTRI 195
S+P V + P+ +RQ + NI+P T +
Sbjct: 20 SVPKVVYDGPIYELRQIEEENIEPDTEL 47
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 24.2 bits (50), Expect = 1.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 121 TPVANSPLSPVRQPPKSNIKPPTRISL 201
TP +++P+SPV P ++ P R +L
Sbjct: 436 TPPSSNPVSPVPSPDPLDLAIPVRETL 462
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.4 bits (48), Expect = 1.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 103 RVKSLPTPVANSPLSPVRQPPKSNIKPPTRIS 198
+V +P+ P++PV++ +PP R+S
Sbjct: 11 KVDRSTSPLPRKPVNPVQELKALFAEPPVRVS 42
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.0 bits (47), Expect = 2.4
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 37 VTMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIK---PPTRISLPT 207
+ +N FR P+ K +K LPT + +R+P K+ ++ ++LPT
Sbjct: 316 IIINWNFRGPRTHRMPQLIRKIFLKYLPT------ILMMRRPKKTRLRWMMEIPNVTLPT 369
Query: 208 RTFSANPLE 234
T+S +P E
Sbjct: 370 STYSGSPTE 378
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 22.6 bits (46), Expect = 3.1
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +3
Query: 450 YGLY-KQ*RYAHDGQICKQFCK 512
Y L+ K R+A ICK FCK
Sbjct: 62 YALFSKDFRFAFKSIICKCFCK 83
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 22.6 bits (46), Expect = 3.1
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +3
Query: 450 YGLY-KQ*RYAHDGQICKQFCK 512
Y L+ K R+A ICK FCK
Sbjct: 510 YALFSKDFRFAFKSIICKCFCK 531
>DQ494417-1|ABF55368.1| 42|Apis mellifera telomerase reverse
transcriptase protein.
Length = 42
Score = 21.8 bits (44), Expect = 5.5
Identities = 5/16 (31%), Positives = 12/16 (75%)
Frame = +3
Query: 513 IQKDYGAAHERFAMHH 560
++KD+G +++ +HH
Sbjct: 10 LKKDFGTYFQQYCLHH 25
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 21.4 bits (43), Expect = 7.2
Identities = 5/8 (62%), Positives = 6/8 (75%)
Frame = -3
Query: 259 LQCCC*CC 236
+ CCC CC
Sbjct: 9 MSCCCWCC 16
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.0 bits (42), Expect = 9.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 500 LANLPVMRISLLFI*PIM*LVENFSVAFMMLRSKSL 393
LA + +M ISL F+ LV NFS F +++ L
Sbjct: 276 LAKVALMTISLWFMAWTPYLVINFSGIFNLVKISPL 311
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.0 bits (42), Expect = 9.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1
Query: 544 DSRCTTCNYRFKD 582
DS+C+ C RF++
Sbjct: 271 DSKCSLCQRRFEE 283
>AB178034-1|BAD27112.1| 76|Apis mellifera apiceropsin protein.
Length = 76
Score = 21.0 bits (42), Expect = 9.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 500 LANLPVMRISLLFI*PIM*LVENFSVAFMMLRSKSL 393
LA + +M ISL F+ LV NFS F +++ L
Sbjct: 26 LAKVALMTISLWFMAWTPYLVINFSGIFNLVKISPL 61
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,067
Number of Sequences: 438
Number of extensions: 3509
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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