Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d15
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    27   1.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   3.4  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   4.5  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   4.5  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   7.9  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    25   7.9  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   7.9  

>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 335 LMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQ 478
           LM  K   +  VQ+++ +AIN S + DL+     +    T  N+R  Q
Sbjct: 495 LMNGKGNDEELVQKVLNYAINQSSNQDLRDRAFAYQRLLTPENVRKAQ 542


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 108  DADEPIIYFENITECLTDDQCDKFTYFAELK 16
            DAD  I+   NI   LT ++CD+F Y   +K
Sbjct: 1023 DADYAIL---NILNLLTSNECDEFDYSVLMK 1050


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 316 VSCLRRQQFGKVRRFRSSQKVYETKRIQQIAVFVTRKKRRQRYHGD*Q 173
           +SC ++Q +   + FR    +      Q++    +R KR+  Y+ D Q
Sbjct: 288 ISCFKKQPYNNPKFFRRKVDLINKFIGQRLMETYSRNKRKHYYNNDWQ 335


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 221 DSYLLYSFRLIDLLRASKSAHLTKLLSS--QATYLYHFACLMKYKDIQK 361
           +S+  +SF  +  L    S H+ K LSS   A  + H  CL  +  + K
Sbjct: 28  NSFFPHSFMFVKSLHLMTSQHIFKCLSSCNYALSILHNICLASFLYLSK 76


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 34   SKLVALVVRKTFCNIFEINNRLVGVRVGANVQR 132
            +K    +V     N+FE+++RLVG+   AN+ +
Sbjct: 1280 TKNAQFIVISLRSNMFELSSRLVGIYKTANMTK 1312


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 155 KYSTIVLLVAMIPLTPLFSRYKDSYLLYSFRLIDLLRASKSAHLTKLLSSQATYLYHFAC 334
           K   I LL+ ++      SR+ D Y L     + LL AS +A L+ LL +QA   Y    
Sbjct: 5   KSIVIGLLICVLFFFFFVSRFNDKYELQPLLTLGLLNASLTA-LSDLL-AQALDSYKLLK 62

Query: 335 LMKYKDI--QKY 364
               +D+  +KY
Sbjct: 63  FRNKRDVSLEKY 74


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -3

Query: 239 NTTNSCLCNE---KKAASAVSWRLAKRSCCICVRRRPQRRCTLAPTRTPTSLLFISKILQ 69
           +TTN+ +  E   KK     S RLA   C IC+       C      TP   +F +  + 
Sbjct: 178 STTNAEIEKEEPSKKQVVPSSQRLADYKCVICLDSPENLSC------TPCGHIFCNFCIL 231

Query: 68  NVLRTTNAT 42
           + L TT AT
Sbjct: 232 SALGTTAAT 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,170
Number of Sequences: 5004
Number of extensions: 36695
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)