Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d15
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical ...    30   0.99 
AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm rece...    29   1.3  
U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical ...    28   3.0  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    27   5.3  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    27   5.3  
Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z96048-6|CAE17841.1|  327|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z81132-15|CAE17969.1|  327|Caenorhabditis elegans Hypothetical p...    27   9.2  
AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm rece...    27   9.2  
AC024785-6|AAF60605.2|  467|Caenorhabditis elegans C-type lectin...    27   9.2  

>AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical
           protein Y43C5A.2 protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 126 YVSADTDADEPIIYFENITECLTDDQCDKFTYF 28
           Y S  TD       F+N T  L  D CD+F YF
Sbjct: 327 YSSTYTDLGAKFSTFDNFTGPLGKDDCDEFQYF 359


>AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 69 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
 Frame = +2

Query: 158 YSTIVLLVAMIPLT--PLFSRYKDSYLLYSFR-----LIDLLRASKSAHLTKLLSSQAT- 313
           +ST+ ++ + + +T  P    Y  S L +S        + LL +S SA    +++  A  
Sbjct: 50  FSTLGIVFSALEITAKPFSHNYNGSLLYFSTSELPETFVSLLMSSWSAFYIIVVAFIAVQ 109

Query: 314 YLYHFACLMKYKDIQKYEVQQLIEWAI 394
           ++Y + CL  Y   +K++  + + W I
Sbjct: 110 FVYRYLCLTNYNATKKFDGVKTVFWII 136


>U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical
           protein R07G3.6 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 152 VRRRPQRRCTLAPTRTPTSLLF 87
           +RR+PQ   TL PT TPT  LF
Sbjct: 159 LRRKPQSIPTLPPTTTPTPRLF 180


>AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical
           protein Y26D4A.8 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 331 VFDEIQRHSKIRGAAVDRMGH*RIPRHGLA----TVSHRIYGQN 450
           +F E+Q+HS+I  A V+++   R   H LA    T  H  YG +
Sbjct: 285 LFKELQKHSRILYATVNKIPVVRKTNHALACVRKTTEHLAYGSS 328


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform b
           protein.
          Length = 1250

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 114 DTDADEPIIYFENITECLTDDQCDKFTYFAEL 19
           +TDADE  I+ EN+     +D  +KFTY + L
Sbjct: 573 ETDADENCIFAENLQRS-EEDIPNKFTYSSSL 603


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform a
           protein.
          Length = 2456

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 114 DTDADEPIIYFENITECLTDDQCDKFTYFAEL 19
           +TDADE  I+ EN+     +D  +KFTY + L
Sbjct: 573 ETDADENCIFAENLQRS-EEDIPNKFTYSSSL 603


>Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical
           protein C33A12.13 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +2

Query: 110 VSALTYNDAVAGA*HKYSTIVLLVAMIP---LTPLFSRYKDSYLLYSFRLIDLLRASKSA 280
           +  + +ND+     ++++     +A+IP   + P F      +L+YS    + L   K+ 
Sbjct: 10  IETIHFNDSYMNFKYQFNEFPTFLAIIPWLYMIPTFLVIYKIFLIYSKTNWEQLEPGKNK 69

Query: 281 H--LTKLLSSQATYLYHF 328
           H  LT  LS   +YL+ F
Sbjct: 70  HVFLTLSLSLIFSYLFFF 87


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 228 ICCIRFVS*TFCELLN-RRTLPNCCLRKQLTYTIL 329
           +CC    +  FC+L+N R      C+RK +  +IL
Sbjct: 43  LCCEMVPAGAFCQLINCRHVYCRICIRKYMELSIL 77


>Z96048-6|CAE17841.1|  327|Caenorhabditis elegans Hypothetical
           protein F57A10.6 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 128 CTLAPTRT-PTSLLFISKILQNVLRTTNATSLLILLNSNRSKP 3
           C L   +T PT    +  +LQ V +T    S L +LNS R  P
Sbjct: 275 CLLTYQQTGPTRFTDLLSVLQVVTKTRQDISYLFILNSIRGPP 317


>Z81132-15|CAE17969.1|  327|Caenorhabditis elegans Hypothetical
           protein F57A10.6 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 128 CTLAPTRT-PTSLLFISKILQNVLRTTNATSLLILLNSNRSKP 3
           C L   +T PT    +  +LQ V +T    S L +LNS R  P
Sbjct: 275 CLLTYQQTGPTRFTDLLSVLQVVTKTRQDISYLFILNSIRGPP 317


>AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 68 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 314 YLYHFACLMKYKDIQKYEVQQLIEWAI 394
           ++Y + CL K + I+K+E  + I W I
Sbjct: 109 FVYRYLCLFKAQKIKKFEGVRSIFWLI 135


>AC024785-6|AAF60605.2|  467|Caenorhabditis elegans C-type lectin
           protein 74 protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 274 IGAPYQIVVFASNLLIPFCVFDEIQRHS 357
           +G P  ++   SN L PF V D +QR S
Sbjct: 170 VGGPQTVLFAYSNDLNPFIVMDTLQRSS 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,945,691
Number of Sequences: 27780
Number of extensions: 214249
Number of successful extensions: 603
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)