Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d14
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    33   0.048
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    28   1.4  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   3.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   9.5  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 32.7 bits (71), Expect = 0.048
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +2

Query: 407 DKDFSLKLXRVINMFLNDEIENDKIYXLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTL 586
           D D SL +  V N+ +ND+I N+          +  +LS    D        +   TFT+
Sbjct: 196 DNDDSLDILNVPNL-VNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTM 254

Query: 587 HRFVDDNVLTQDE 625
           ++F D +VL +D+
Sbjct: 255 NKFADLSVLEEDD 267


>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 392 EQVYPDKDFSLKLXRVINMFLNDEIE 469
           +QV+PD   S +  R++N F+ND  E
Sbjct: 46  KQVHPDTGISNQAMRILNSFVNDIFE 71


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 581 TLHRFVDDNVLTQDELSFLAKFS 649
           TL +F  DN+L Q +LSF +K S
Sbjct: 287 TLQQFDGDNILQQWKLSFFSKIS 309


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 143  ISKNTESNVEDIPSHKAKSVRKKL 214
            I K+ E  V D PS +  +VRK L
Sbjct: 1339 IGKHIEKTVNDTPSEEKATVRKNL 1362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,068
Number of Sequences: 5004
Number of extensions: 37494
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)