Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d12
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    30   0.26 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    28   1.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   3.2  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.4  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   7.4  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.7  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   9.7  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +3

Query: 312 YPMAYFVNTDYKLKLECARITSDLLYKNKNEVAINRPKISSFKLQLNDVILDTIETIEYD 491
           +P+  ++N + KL  EC  I   +LY NKN+  IN   I      + +  ++     +  
Sbjct: 332 FPIHAYLNFNAKLYEEC--IPPSILYFNKNDENINVGNIEDITNYMYETFINEASLCDKF 389

Query: 492 LQNKVLTITAPVQDQ 536
           ++ K   I  P+  Q
Sbjct: 390 MKRKHERIETPLSSQ 404


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 60  ERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 155
           ERG T  PK   K+   K  I A +  +TTA+
Sbjct: 17  ERGFTNSPKTHPKMSSLKSFIKAVRASKTTAE 48


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 555 IYFNILNSSDSWEVPKYMKNLFDEMQLEPPAILPLG 662
           I +N   ++ +W++P Y +   +E Q  PP   PLG
Sbjct: 36  IPYNTSANNRNWQIPLYWQQRGNEFQASPPP--PLG 69


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 384 LYKNKNEVAINRPKISSFKLQLNDVILDTIETIEYDLQNKVLT-ITAPVQDQELRKSIIY 560
           LY +   + +NRP +S  ++  ND+   T +TI  D  N+++T I A      LR S +Y
Sbjct: 484 LYYHLIRICLNRPFLSRKEVTANDL---TPKTICTDSINEIVTVIRAHRTANGLRYSTLY 540


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 273 AYLIWDTIVFVHF 235
           A+++W  I+FVHF
Sbjct: 401 AFIVWTAIIFVHF 413


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 345 KLKLECARITSDLLYKNKNEVAINRPKISSFKLQLNDVI 461
           K  LEC   T   L  NK+E+++N  ++S  +  L+ ++
Sbjct: 138 KKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLM 176


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 122 DSFLVLLQLFRLFWGFCYAALS*RHGMAAAFFCRRF 15
           +  L +  LF LFWG C  A +    +   +F + +
Sbjct: 446 NGLLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTY 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,334
Number of Sequences: 5004
Number of extensions: 54844
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)