Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d11
         (156 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0127 - 977667-978719,978875-979051                               26   3.6  
12_01_0302 - 2286171-2286341,2286747-2286968                           26   4.8  
06_01_0139 - 1061630-1062226,1062318-1062449,1062945-1063934,106...    26   4.8  
11_06_0160 - 20794974-20795977,20796241-20796295                       25   6.3  
02_04_0192 + 20795659-20796309                                         25   6.3  
06_02_0011 - 10569471-10572245                                         25   8.3  

>06_01_0127 - 977667-978719,978875-979051
          Length = 409

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 4   FKLLSLPPRSTASW*ILAMFLPTPLEST*NLNPLFFTVL 120
           F +  +PP+  A   ++  F+ TPL S+  ++P F+ VL
Sbjct: 233 FIMFGVPPQRAA---LVPTFVSTPLLSSSTMSPTFYRVL 268


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 84  RLQRSRKKHGENLPTGGRSRRKGEKLE 4
           RL+R RK +  ++   G  + +GEKLE
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLE 83


>06_01_0139 -
           1061630-1062226,1062318-1062449,1062945-1063934,
           1064041-1064211
          Length = 629

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 4   FKLLSLPPRSTASW*ILAMFLPTPLEST*NLNPLFFTVL 120
           F  L +PP+  A   ++  F+ TPL S+ ++ P F+ VL
Sbjct: 453 FITLGVPPQRAA---LVPTFVSTPLLSSSSMPPTFYRVL 488


>11_06_0160 - 20794974-20795977,20796241-20796295
          Length = 352

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 102 GIKILRRLQRSRKKHGENLPTGGRSRR 22
           G  +LRR + SR++HG  L  G  +R+
Sbjct: 166 GGALLRRAESSRRQHGRALREGREARQ 192


>02_04_0192 + 20795659-20796309
          Length = 216

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 5   SSFSPFLRDLPPVGRFSPCFFRLLWS-LRKILIPYS 109
           SS SPF+  LPP    SP F R L S LR   +P+S
Sbjct: 47  SSSSPFVSFLPPPTSPSP-FHRFLPSPLRASSVPFS 81


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 65  FRLLWSLRKILI 100
           F+LLWSLRK LI
Sbjct: 15  FKLLWSLRKYLI 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,114,163
Number of Sequences: 37544
Number of extensions: 58349
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)