Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d09
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    27   2.1  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    27   2.1  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    25   8.7  

>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 15  WQHWTIVATLSPSFVTMPPKKQ 80
           W+ W+ + +L P  V +P KKQ
Sbjct: 84  WEEWSSIDSLVPIVVDLPSKKQ 105


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 20  TLDYCGNTFSILCHDATEEATREIRVLRVQTRGKETVN 133
           T  Y G T     HD+ E+A   ++++  +T+  E+ N
Sbjct: 503 TKKYLGTTIQTSTHDSEEDAVSALQLVFYKTKSNESQN 540


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 27  TIVATLSPSFVTMPPKKQPEK 89
           ++V  LS SF+T+ P ++P+K
Sbjct: 172 SVVPVLSSSFLTVKPAEEPKK 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,809
Number of Sequences: 5004
Number of extensions: 8510
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)