Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d06
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    31   0.11 
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   3.2  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   3.2  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.7  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.9  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 363
           ++  +L+C  C ++ EI N  M+P+++L ++ +L L+
Sbjct: 240 LQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 276


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 256 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 363
           E +KL+ ++ +SV    +YF++P  R  ++P++  D
Sbjct: 613 ELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILAD 648


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSM 390
           +E++K +  +   +AE    F+Q +  +T I    L  C  +L S+
Sbjct: 336 VEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKPLRFCAERLTSL 381


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +1

Query: 355 ELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESL 453
           +L  CKH     C           CPLCR   +
Sbjct: 781 KLQACKHFFHQACIDQWLTTGNNSCPLCRAHGV 813


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +1

Query: 367 CKHQLCSMCXXXXXXXXXXPCPLCRVESL 453
           C H  C  C           CPLCR + +
Sbjct: 375 CSHVFCLHCLIILQKQKVDFCPLCRAKEV 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,653
Number of Sequences: 5004
Number of extensions: 36184
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)