Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d06
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632...    36   0.029
12_02_0656 + 21601782-21601925,21602249-21602460,21602686-216028...    29   2.5  
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    29   3.3  
05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216     27   7.6  
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521...    27   7.6  
02_03_0215 + 16505994-16506542,16506803-16507894                       27   7.6  

>07_03_1576 -
           27862043-27862129,27862935-27862988,27863042-27863243,
           27865015-27865249,27865338-27865404,27865489-27865639,
           27866898-27866957,27867402-27867466
          Length = 306

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +1

Query: 358 LDTCKHQLCSMCXXXXXXXXXXPCPLCR-----VESLHFNVYSINRNVVDVIKMQRDECR 522
           L TC H +C  C           CP CR     V S    +Y+ NR++VD+  ++++  R
Sbjct: 178 LPTCSHAMCIKCYRDWRSRSQS-CPFCRDSLKRVNSADLWIYTDNRDIVDIATVRKENLR 236

Query: 523 TM 528
            +
Sbjct: 237 RL 238


>12_02_0656 +
           21601782-21601925,21602249-21602460,21602686-21602813,
           21602905-21602986,21603308-21603406,21603619-21604054,
           21604280-21604350,21604438-21604523,21604740-21604750
          Length = 422

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 534 LFHCATLVTLHFNHVHNVSVYAVNVEMQTFNPAQGTWY 421
           L   A L  L F+HV+  + Y V + ++   PA+  WY
Sbjct: 186 LISSAILYFLCFSHVNQGNSYIVKIAIKDLVPAEAWWY 223


>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 283 CFSVAEIKNYFMQPIDRLTIIPVLELDTCK 372
           CFS     N++M+PI+ LT++  +++DT +
Sbjct: 237 CFSTEGTANFYMRPIEGLTVL--VDMDTAE 264


>05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216
          Length = 137

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 20  EGDTRELDRTLSGYEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 160
           E D+ + D     Y +Y    PL L  Q+ +  N F+   + + A+P
Sbjct: 9   ECDSAQFDVLGQSYRQYQLQSPLLLQQQVFSPYNEFVIQQYGTAASP 55


>04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,
            5219746-5219817,5219918-5220491,5220575-5220687,
            5220842-5220941,5221059-5221181,5221268-5221335,
            5221461-5221610,5221715-5221858,5222097-5222288,
            5222710-5222794,5222892-5223043,5223138-5223296,
            5223552-5223605,5223698-5223836,5223955-5224088,
            5224200-5225117
          Length = 1121

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +1

Query: 358  LDTCKHQLCSMCXXXXXXXXXX-PCPLCR---VESLHFNVYSINRNVVDVIKMQRDECRT 525
            L  C H++C  C           PCPLCR    +S    + S  R  VD     +D C+ 
Sbjct: 909  LTPCAHRMCRECLLSSWRTPSGGPCPLCRSPITKSELITLPSQCRFQVDPENNWKDSCKV 968

Query: 526  ME 531
            ++
Sbjct: 969  IK 970


>02_03_0215 + 16505994-16506542,16506803-16507894
          Length = 546

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 395 MHIEHN*CLHVSSSNTGIIVNLSIGCIK*FLISATEKQMLHC 270
           M   H   L VSS+N GI+ NLSI       +  T K +L C
Sbjct: 1   MEENHGFVLEVSSNNEGIVRNLSI-----INVGETNKNVLKC 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,473,489
Number of Sequences: 37544
Number of extensions: 211693
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)