Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d06
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    35   0.034
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    35   0.045
AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical ...    31   0.56 
AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical ...    31   0.74 
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    30   0.97 
Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    30   1.3  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.     27   6.9  
AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical ...    27   6.9  
AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical...    27   9.1  

>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = +1

Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 432
           M   KL   +CF   ++     +P D   ++PV  L  C H +C +C           CP
Sbjct: 1   MNLEKLSELLCFQCGKLYESITKPDDEAILVPV--LGACLHSICILC--ATGLESPNSCP 56

Query: 433 LCRVESLHFNVYS 471
           +C       N+ S
Sbjct: 57  ICENPEAFGNIIS 69


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 34.7 bits (76), Expect = 0.045
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = +1

Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 432
           +EF  +QC+ICF V    N+  +P+  L         TCKH +C+ C           CP
Sbjct: 19  LEFEDVQCHICFQV----NH--EPVTFL---------TCKHSICAGCAGRWLSSCSV-CP 62

Query: 433 LC--RVESLHFNVYSINRNVVDVIKMQRDE 516
           +C  RV  +H N   + +  ++ +K+  ++
Sbjct: 63  MCRTRVREIHLN-DDLKKKSLEFLKLHPEQ 91


>AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical
           protein F43C11.8 protein.
          Length = 338

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
 Frame = +1

Query: 253 MEFVKLQ-CNICFSVAEIKNYFMQPIDRLTIIPVLELDT----CKHQLCSMCXXXXXXXX 417
           M F++ + CN  FS A  +N   + + +L ++P L+L      C H +C  C        
Sbjct: 1   MSFIECEICNEDFSSATDEN-IPRILSKL-LLPFLKLKNKNSGCGHTICHGCAEKLLQNS 58

Query: 418 XXPCPLCRVESLHFNVYSINRNVVDVIKMQRDECRTME 531
              CP CR  +    V  + +N   +  ++  + RT E
Sbjct: 59  MILCPFCREATNVSTVKDLQKNFALLQAVEHAKTRTEE 96


>AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical
           protein B0281.8 protein.
          Length = 292

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 367 CKHQLCSMCXXXXXXXXXXPCPLCR--VESLHFNVYSINRNVVDVIKMQRDECRTME*NK 540
           C H LC  C           CP CR   E   +N+ S+++N   +I+M +   +T E  K
Sbjct: 28  CSHTLCEGCIKKLLKNGRVVCPFCREPTEVPVYNIKSLHKN-FSLIQMIKIVTKTTEVEK 86


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 20/81 (24%), Positives = 30/81 (37%)
 Frame = +1

Query: 256 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPL 435
           E+V  +C ICF   E+      P           +  C H  C  C           CP 
Sbjct: 132 EYVDDECKICFEKYEVTGN-RSP----------RVFNCGHTYCESCIQVCKHQFQIKCPF 180

Query: 436 CRVESLHFNVYSINRNVVDVI 498
           C   S   N +S N+ +++V+
Sbjct: 181 CTTTSYQIN-FSTNKLILEVL 200


>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +1

Query: 322 PIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRNVVDV 495
           PI +  +I    +  C H+ C +C           CP+CR   +  N+++    V+D+
Sbjct: 13  PICQCKMIVPTTIPACGHKFCFICLKGVYMNDMGGCPMCR-GPIDSNIFAQPSQVLDL 69


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = +1

Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 432
           + FV L C+ C S+ +   +F     R  +       +C H LCS C           CP
Sbjct: 22  LHFVSLVCSGCDSLGDRDRFFDNDKKRPCV------SSCNHSLCSQC-----FDKFTECP 70

Query: 433 LCRVESLHFNVYSINRNVVDVIK 501
           +C+   +    Y   R +V+  K
Sbjct: 71  ICKEPLVRSENYQA-RKIVEHFK 92


>AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical
           protein F42G2.5 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 367 CKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRN 483
           C H +C  C           CP CR E+   +V S+ +N
Sbjct: 155 CGHSICQSCASKLAKNCVILCPFCRNETNVSSVASLPKN 193


>Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical
           protein T15D6.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +1

Query: 79  RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 171
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 338 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 371


>U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical
           protein K11H12.8a protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 543 SFILFHCATLVTLHFNHVHNVSVYAVNVEMQTFNP 439
           +F+L+    LV    NH H+  +Y  ++++++F+P
Sbjct: 277 AFLLYDTQRLVKKAENHPHSSQLYGSDMQIRSFDP 311


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 364 TCKHQLCSMCXXXXXXXXXXPCPLCR 441
           TC H LC  C           CP CR
Sbjct: 26  TCGHALCHKCITAMVNNSTVECPFCR 51


>AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +1

Query: 79  RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 171
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 230 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 263


>AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical
           protein B0281.3 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = +1

Query: 367 CKHQLCSMCXXXXXXXXXXPCPLCR--VESLHFNVYSINRN--VVDVIK 501
           C H LC  C           CP CR   E    N+ S+++N  ++ VIK
Sbjct: 57  CCHTLCEGCIKKLLNYSRIVCPFCREPTEVPGNNIKSLHKNFSLIQVIK 105


>AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical
           protein Y105E8A.14 protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 340 IIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCR 441
           I+P   + +C H+ C +C           CP+CR
Sbjct: 32  ILPTT-IPSCGHKFCFICLKGVSVSNNGDCPICR 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,615,662
Number of Sequences: 27780
Number of extensions: 210453
Number of successful extensions: 528
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)