Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26d01
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger...   281   9e-75
UniRef50_P32584 Cluster: Protein-S-isoprenylcysteine O-methyltra...    38   0.31 
UniRef50_Q875B9 Cluster: Part of an hypothetical protein Pa5D000...    36   0.71 
UniRef50_A6FBR1 Cluster: Response regulator; n=1; Moritella sp. ...    33   5.0  
UniRef50_Q833T4 Cluster: Site-specific recombinase, phage integr...    33   6.6  
UniRef50_Q9FYL8 Cluster: F21J9.11; n=1; Arabidopsis thaliana|Rep...    33   6.6  
UniRef50_UPI0001555097 Cluster: PREDICTED: hypothetical protein;...    33   8.7  
UniRef50_A6LGL8 Cluster: Putative outer membrane protein, probab...    33   8.7  

>UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger
           protein JAZ; n=1; Bombyx mori|Rep: Double-stranded
           RNA-binding zinc finger protein JAZ - Bombyx mori (Silk
           moth)
          Length = 430

 Score =  281 bits (690), Expect = 9e-75
 Identities = 129/159 (81%), Positives = 129/159 (81%)
 Frame = +2

Query: 200 MSIPFYKMNSREEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNYNGGYWSDDQXXXXX 379
           MSIPFYKMNSREEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNYNGGYWSDDQ     
Sbjct: 1   MSIPFYKMNSREEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNYNGGYWSDDQGPGPF 60

Query: 380 XXXXXXXXXXXXXXXXXXXXXXXXNQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTK 559
                                   NQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTK
Sbjct: 61  DHPPRPPPNFMFGPGPGPMFGPLPNQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTK 120

Query: 560 DSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLFK 676
           DSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYL K
Sbjct: 121 DSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLSK 159


>UniRef50_P32584 Cluster: Protein-S-isoprenylcysteine
           O-methyltransferase; n=4; Saccharomycetaceae|Rep:
           Protein-S-isoprenylcysteine O-methyltransferase -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 239

 Score = 37.5 bits (83), Expect = 0.31
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = -2

Query: 523 SLHSVRSSHSRAIRTKSSSEWVLIG*RPKHWSWSWSKHEVRRGSWWMIKRSRTLVVRPIS 344
           ++H+   S S  ++TK  S+ VL+    K   +SWS+H    G +W    ++ L++ P+S
Sbjct: 139 AMHTAGHSFSHIVKTKKESDHVLV----KTGVYSWSRHPSYLGFFWWAIGTQLLLLNPLS 194

Query: 343 PIV 335
            ++
Sbjct: 195 LVI 197


>UniRef50_Q875B9 Cluster: Part of an hypothetical protein Pa5D0005;
           n=5; Pezizomycotina|Rep: Part of an hypothetical protein
           Pa5D0005 - Podospora anserina
          Length = 154

 Score = 36.3 bits (80), Expect = 0.71
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 439 KHWSWSWSKHEVRRGSW 389
           +HW W W+ H+VRRG W
Sbjct: 118 QHWQWRWNVHKVRRGDW 134


>UniRef50_A6FBR1 Cluster: Response regulator; n=1; Moritella sp.
           PE36|Rep: Response regulator - Moritella sp. PE36
          Length = 643

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = -2

Query: 679 FFEKVMQTRHSKRVQFKSTNTTVLRLYFVQYFSRNVFQTVLCKSTTH*ISFNSLHSVRSS 500
           FF+++ Q+ H   + F +TN T + +   Q F   +F   L    T   +F++ +++ SS
Sbjct: 90  FFQQLKQSPHISGIYFANTNGTFVHVQREQGFKEPLFSRKLITFDTKLTTFDTNNALNSS 149

Query: 499 H 497
           H
Sbjct: 150 H 150


>UniRef50_Q833T4 Cluster: Site-specific recombinase, phage integrase
           family; n=2; Enterococcus|Rep: Site-specific
           recombinase, phage integrase family - Enterococcus
           faecalis (Streptococcus faecalis)
          Length = 392

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 479 GPDGPAMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPEYC 616
           G  G   RR    + VKR + RCG+ KD   ++ R  +  +  EYC
Sbjct: 307 GKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAEYC 352


>UniRef50_Q9FYL8 Cluster: F21J9.11; n=1; Arabidopsis thaliana|Rep:
           F21J9.11 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 191

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +3

Query: 306 ITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRTSC-LDQDQDQCLGLYP-IKTHSEEDL 479
           I  TA+ L+    DI +++K L RLI     + +SC LD D+   LGL   I+  ++ D 
Sbjct: 89  IIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDR---LGLGKIIRVSTKTDA 145

Query: 480 VRMALLC 500
              A+LC
Sbjct: 146 SNSAILC 152


>UniRef50_UPI0001555097 Cluster: PREDICTED: hypothetical protein;
           n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           hypothetical protein - Ornithorhynchus anatinus
          Length = 545

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = +3

Query: 387 HQDPLRTSC---LDQDQDQCLGLYPIKTHSEEDLV-RMALLCEDL 509
           +Q+P+R  C   L +  DQC   +P +  S ED+V +++ LC++L
Sbjct: 484 YQEPVRGDCPQALKEITDQCRAYHPSERPSAEDIVDKLSALCDEL 528


>UniRef50_A6LGL8 Cluster: Putative outer membrane protein, probably
            involved in nutrient binding; n=1; Parabacteroides
            distasonis ATCC 8503|Rep: Putative outer membrane
            protein, probably involved in nutrient binding -
            Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
            / NCTC11152)
          Length = 1158

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
 Frame = +2

Query: 200  MSIPFYKMNSREEYEMNEDCGWTEEP-----PRLPRRKIRNN----EYSNAFGNYNGGYW 352
            +++PF   N+   YE   +  WT E      PR+ +   +NN    EY N FG Y+  +W
Sbjct: 1024 VTVPFRLNNTNVSYEFFNNY-WTPERQDARYPRITQSPYKNNTTNSEYDNGFGPYSSSFW 1082


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,874,903
Number of Sequences: 1657284
Number of extensions: 13646021
Number of successful extensions: 35585
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35558
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)