Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26c18
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   1.8  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   5.5  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    24   9.6  

>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 45  SSNQHINYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASK 170
           S    ++YH+K+  L+ + +   C+C   N  KLL S +  K
Sbjct: 209 SDRTDLSYHKKLNTLFTAYWDLQCMC--SNPPKLLASDTLPK 248


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +3

Query: 24  YFKLLIHSSNQHINYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASKINKTLVYMI 197
           Y   +++ + +    H K   L  S     CL  +   ++LL++ ++S+I   L+Y I
Sbjct: 318 YISQIVYKTPELFKNHIKSFFLIASDSDDTCLLKINILSRLLDAQNSSQILPELLYYI 375


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 120 CIVKNKTKLLNSVSASKINKTLV 188
           C++ NKT L++S + S + +T++
Sbjct: 214 CLILNKTDLISSEALSVVRQTIL 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,012
Number of Sequences: 5004
Number of extensions: 24016
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)