Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26c18
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   6.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 181 VLFIFDAETLFSN-LVLFFTIHRQYVVNVLMY 89
           +LF+F   T+F N LV+   +  +Y+     Y
Sbjct: 51  LLFLFSVATVFGNTLVILAVVRERYLHTATNY 82


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 39  IHSSNQHINYHRKI 80
           IH++N + NY++K+
Sbjct: 323 IHNNNNYKNYNKKL 336


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 246 YTVNLQLYNVNNVSLCISCRLMFYLSLMQKH 154
           + +++Q YNV+  S  +   +M  L   Q H
Sbjct: 64  FGLSIQHYNVDEYSHTVDFHVMLKLMWEQSH 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,447
Number of Sequences: 438
Number of extensions: 1628
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)