Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26c14
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0134 + 7082462-7082627,7084199-7084325,7084404-7084611,708... 30 1.8
11_06_0145 - 20615044-20617167,20617444-20618076 29 3.2
01_06_1774 + 39803747-39803825,39805338-39805555,39805856-398064... 29 3.2
11_01_0089 + 670597-672210 29 4.2
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 28 5.6
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814... 27 9.8
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070... 27 9.8
04_04_1550 - 34332948-34335986 27 9.8
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377... 27 9.8
>02_02_0134 +
7082462-7082627,7084199-7084325,7084404-7084611,
7084864-7084990,7085071-7085255,7085332-7085454,
7085777-7085836,7085980-7086117
Length = 377
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 161 LY*IFVSGGLVIYFYERIIAFGPIDHRR 78
LY IF GL YFYE + + P +HR+
Sbjct: 213 LYGIFPYSGLKFYFYETMKTYVPEEHRK 240
>11_06_0145 - 20615044-20617167,20617444-20618076
Length = 918
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 455 LSSAGFVVFQPCVFERRQMTAVGVCDFDQHGIAYGTAVLIAKFDTHV 315
L F++ CV++R + VG+ D G Y V+ +HV
Sbjct: 238 LKERNFLLLLDCVWQRLDLEEVGIPSLDLVGSCYNRRVVFTACSSHV 284
>01_06_1774 +
39803747-39803825,39805338-39805555,39805856-39806436,
39807239-39808136
Length = 591
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 126 NYEATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFF 239
NY +TA N+++ D H SW N ++G + Y F+
Sbjct: 500 NYLSTALANIMRKVTTRDGHSSWLTDNINLGKLDYYFY 537
>11_01_0089 + 670597-672210
Length = 537
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -2
Query: 141 RWPRNLFLRAHNCVRP-NRSPACRESRWKRRPPTT 40
RWPR LFL RP R+ C R PPTT
Sbjct: 51 RWPRGLFLSPLTKPRPTRRAHQCVPHPRPRLPPTT 85
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 438 KPGRREDKIVAAYFVEWGVYGRSFPVDKVPLPNLSHLLYGFIPICGGDGINDA 596
+PG RE + + V RS P+DK L ++ + GDG NDA
Sbjct: 665 RPGVRE-AVATCHAAGINVMARSLPLDKHTLVTNLRGMFNEVVAVTGDGTNDA 716
>09_04_0078 +
14379720-14379786,14379903-14379974,14381093-14381497,
14382835-14382911,14383016-14383135,14383227-14383997,
14384933-14385146,14385269-14385735
Length = 730
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 222 IAYVFFDEQQVWKGDADSKRATINVIVSGQFNMRVKLCNEDGCSISDPVLVKIADTDG 395
+A V E+ +WK D +N+++S + V +CN DG D L I+ T G
Sbjct: 155 VAAVVGVERLMWKSRKDVVH-WLNMLISDVASDEVAICNNDG---KDAKLANISTTKG 208
>05_05_0338 +
24204301-24206262,24206337-24206495,24206864-24207035,
24207544-24207842,24208301-24208355,24208438-24208487,
24208522-24208827
Length = 1000
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 492 VYGRSFPVDKVPLPNLSHLLYGFIPICGGDGINDA 596
V RS P+DK L +Y + GDG NDA
Sbjct: 655 VIARSLPMDKYKLVTSLKSMYQEVVAVTGDGTNDA 689
>04_04_1550 - 34332948-34335986
Length = 1012
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 24 KLLNVLWLVV-AVSNAIPGTPVIDWAERNYALVKINYEATAYENLIKLKEQVDVHVSWNV 200
KLLN L+L ++ ++P + A R +L + + ++L L E + +S+N+
Sbjct: 195 KLLNDLFLDGNGLTGSLPKDLYMMPALRKLSLQENKLSGSLDDDLGNLTEITQIDLSYNM 254
Query: 201 WNGDIGDI 224
+NG+I D+
Sbjct: 255 FNGNIPDV 262
>04_03_0306 +
14136338-14136686,14137408-14137442,14137701-14137778,
14138046-14138124,14138731-14138823,14139472-14139556,
14140270-14140345,14140669-14140794,14141039-14141137,
14141238-14141339,14141561-14141671,14141809-14141904,
14142488-14142539,14142624-14142735,14142879-14142943,
14144124-14144521,14145236-14145330,14145989-14146015,
14146081-14146156,14146368-14146421,14146741-14146863,
14146955-14147023
Length = 799
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Frame = +3
Query: 72 PGTPVIDWAERNYALVK---INYEATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFFD 242
P T DW ++ + EA E +KEQ + +N+W D G + + FD
Sbjct: 278 PRTTFADWNTSLQTIITWSPYSTEAELLEQFSSIKEQGTRIIIYNLWEDDEGHLE-LDFD 336
Query: 243 EQ----QVWKGDADSKRATINVIVSGQF 314
E Q+ G+ D K N++++ QF
Sbjct: 337 EDIHDIQLRGGNRDEK----NILMAKQF 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,339
Number of Sequences: 37544
Number of extensions: 414796
Number of successful extensions: 1231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -