Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26c12
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    32   0.079
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   3.0  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    26   5.2  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   6.8  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   6.8  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 514  GKLADDEYILIADRMYVDLIYSEFRAIILPQSAYIIK 624
            GK A DEY+  A+   VD++Y   +  I+  S YI+K
Sbjct: 2904 GKYAFDEYLYHAEIQNVDILYISTKHFIITGSNYIVK 2940


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
 Frame = +1

Query: 241  NNYSDPDNENDMLHMTVLNSVFLNEHAKLYYRHLLRNDQAEARKTILNADDVYECVLIKP 420
            NNYS PD   D   M            KLY+    +ND  +  ++I+NA ++ E  ++K 
Sbjct: 2174 NNYSSPDLTEDFKRM-----------EKLYFEK--KNDIQQLERSIVNASNMKEEKMLKN 2220

Query: 421  IRTEHFRS--VDEAGEHNMGVL--KIIIDTVIKYIGKLADDE 534
              +    S  +DE     M     K++  ++  Y+  L++ +
Sbjct: 2221 HHSREMSSFIIDEREYLRMSTFRSKMLTQSITHYLKCLSESD 2262


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +1

Query: 262 NENDMLHMTVLNSVFLNEHAKLYYRHLLRNDQ------AEARKTILNADDVYE 402
           N  + LH TVL  + L   A+ YY+  L N +      AE  KT++   D  E
Sbjct: 449 NSFNTLHKTVLEMLDLQRQAEHYYKRKLDNAKAINALWAENLKTVVEEQDQIE 501


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 164 LKGVNFTEAQRSNLIGFLVEHI*NNVVI 81
           ++G+N  +    NL+ F VEH+ N+V I
Sbjct: 248 IQGLNCEKGSIGNLLCFAVEHVNNHVEI 275


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 253 DPDNENDMLHMTVLN--SVFLNEH 318
           DPDN  D++ MTV N    FL +H
Sbjct: 904 DPDNSRDVIDMTVKNYSLAFLIDH 927


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 444 RRRGWRTQHGRFKDHHRYGHQVHWQTGRRRVHFD 545
           R+R    QH  F++H R G  +H  T  +++H +
Sbjct: 498 RQRLDELQHSIFEEHKRVGSDLHQDT-EKKLHLE 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,258
Number of Sequences: 5004
Number of extensions: 46613
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)