Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26c12
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0278 - 19694590-19694757,19696331-19696391,19696503-196966...    31   0.57 
12_01_0950 - 9463148-9464358,9465326-9465644                           29   4.0  
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207...    28   7.0  
09_06_0287 + 22047404-22048409,22048754-22049967                       27   9.3  

>05_04_0278 -
           19694590-19694757,19696331-19696391,19696503-19696658,
           19696740-19696912,19698199-19698276,19698399-19698575,
           19698924-19699001,19700573-19700692,19700803-19701183
          Length = 463

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +1

Query: 226 VTRPRNNYSDPDNENDMLHMTVLNSVFLNEHAKLYYRHLLRNDQAEA-RKTILNADDV 396
           ++R    YS+ +++N+    + +N+ FLN H  +++   +R+  +E+ RK+I  + DV
Sbjct: 5   MSRMEEEYSEHEDQNNGGSNSQVNNEFLNTHNDIFHMTQIRSGPSESLRKSIGTSKDV 62


>12_01_0950 - 9463148-9464358,9465326-9465644
          Length = 509

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 246 LFRSR*RKRHVAH---DRVKQRVFKRARKIVLSALVAQRSSRGEK 371
           +F +R   R + H    RVKQ+ FK+ R  +L  L++QR+   E+
Sbjct: 124 VFGARLATREIKHRRAKRVKQKFFKQNRGHLLEQLISQRADIAER 168


>02_01_0311 -
           2075881-2076165,2076450-2076519,2076628-2076691,
           2076798-2076837,2076930-2077006,2077095-2077311,
           2077482-2078132
          Length = 467

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 467 LCSPASSTLLKCSVRIGLINTHSYTSSAL 381
           LC   +ST L C+++   I T S +SS+L
Sbjct: 41  LCGSTNSTSLSCAIQSSNIKTESISSSSL 69


>09_06_0287 + 22047404-22048409,22048754-22049967
          Length = 739

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 246 LFRSR*RKRHVAHDRVKQRVFKRARKIVLSALVAQRSSRGEK 371
           +F  R +KR  A  +++Q+ FK+ R  +L  LVAQR+   E+
Sbjct: 357 IFIIRKQKRRRAK-KIRQKYFKQNRGQLLQQLVAQRADIAER 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,719
Number of Sequences: 37544
Number of extensions: 294312
Number of successful extensions: 789
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)