Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26c12
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   3.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   3.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   3.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   3.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   3.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   3.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   3.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   9.9  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +1

Query: 469 MGVLKIIIDTVIKYIGK 519
           MG++++I+ TV KY+G+
Sbjct: 146 MGIVELIMFTVNKYVGE 162


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 267 KRHVAHDRVKQRV 305
           KRH+A D+VK RV
Sbjct: 26  KRHLAQDKVKVRV 38


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 KRRRGWRTQHGRFKDHHR 494
           +RRR W  Q  R ++H R
Sbjct: 37  RRRREWMIQQEREREHER 54


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 KRRRGWRTQHGRFKDHHR 494
           +RRR W  Q  R ++H R
Sbjct: 37  RRRREWMIQQEREREHER 54


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 KRRRGWRTQHGRFKDHHR 494
           +RRR W  Q  R ++H R
Sbjct: 37  RRRREWMIQQEREREHER 54


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 KRRRGWRTQHGRFKDHHR 494
           +RRR W  Q  R ++H R
Sbjct: 37  RRRREWMIQQEREREHER 54


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 KRRRGWRTQHGRFKDHHR 494
           +RRR W  Q  R ++H R
Sbjct: 37  RRRREWMIQQEREREHER 54


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 KRRRGWRTQHGRFKDHHR 494
           +RRR W  Q  R ++H R
Sbjct: 37  RRRREWMIQQEREREHER 54


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 KRRRGWRTQHGRFKDHHR 494
           +RRR W  Q  R ++H R
Sbjct: 37  RRRREWMIQQEREREHER 54


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 KRRRGWRTQHGRFKDHHR 494
           +RRR W  Q  R ++H R
Sbjct: 37  RRRREWMIQQEREREHER 54


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
 Frame = +1

Query: 127 LDLCASVKLT----PFKPMRPPKPMQCWIHP 207
           LD+    KLT     + P+    P+  WIHP
Sbjct: 515 LDMLVLPKLTLEVEEWNPLTDTVPIHTWIHP 545


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 486 HHRYGHQVHWQTGRRR 533
           +H  G   HW +GRR+
Sbjct: 261 NHLSGGTNHWDSGRRK 276


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 229  TRPRNNYSDPDNENDMLHMTVLNSV 303
            T PR N   PDN N+ LH+    SV
Sbjct: 1473 TYPRIN---PDNHNEKLHIPKDKSV 1494


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 415  KPIRTEHFRSVDEAGEHNMGVLKIIIDTVIKY 510
            +PI  + +RSVDE        L  ++  + KY
Sbjct: 1152 EPILADMWRSVDEMEVRKTSALTTVLTGLRKY 1183


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 415  KPIRTEHFRSVDEAGEHNMGVLKIIIDTVIKY 510
            +PI  + +RSVDE        L  ++  + KY
Sbjct: 1148 EPILADMWRSVDEMEVRKTSALTTVLTGLRKY 1179


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 444 RRRGWRTQHGRFKDHHRYGHQVHWQTGRRRV 536
           RR  W  Q  R ++H R   ++  +   RR+
Sbjct: 39  RREAWLIQQEREREHQRLTKKMILEYELRRI 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,483
Number of Sequences: 438
Number of extensions: 3535
Number of successful extensions: 34
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)